DC887897
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20 Identity = 50/104 (48.08%), Postives = 74/104 (71.15%), Query Frame = -1 Query: 254 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEP 565 IKET+++ +E++GADI+++AL P LIA NAGV G VV EK+ S+ + GYNA T YE+L+ +G+IDP KV R L++A+SV+ L + +VVE +P+P Sbjct: 429 IKETIEDHDERLGADIIQKALQAPASLIANNAGVEGEVVIEKIKESE-WEMGYNAMTDKYENLIESGVIDPAKVTRCALQNAASVSGMVLTTQAIVVEKPKPKP 531
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_ZYMMO (60 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=3 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20 Identity = 50/105 (47.62%), Postives = 74/105 (70.48%), Query Frame = -1 Query: 239 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKE--PEPAMPAG 547 N++++ G DIV+RAL P++ IA+NAG +G+VV+ K++ ++ K G+NA T YEDL A G+IDPTKVVR L+ A+SVA + ++ V ++ E P PAMP G Sbjct: 433 NEDQQRGIDIVRRALQAPVRQIAQNAGFDGAVVAGKLIDGNDDKIGFNAQTEKYEDLAATGVIDPTKVVRTALQDAASVAGLLITTEAAVGDLPEDKPAPAMPGG 537
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_SYNR3 (60 kDa chaperonin OS=Synechococcus sp. (strain RCC307) GN=groL PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20 Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = -1 Query: 230 EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHK---YGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 541 EE +GA+IV +AL PLK IA+NAG NGSVV+E V HK G+NAA+ Y D++AAGIIDP KV R L++A+S+A L ++C+VV++ E + A PAG M Sbjct: 435 EELIGANIVAQALDAPLKRIAENAGANGSVVAENV----RHKPFSEGFNAASNEYVDMLAAGIIDPAKVTRSGLQNAASIAGMVLTTECIVVDLPEKKEAAPAGGGM 537
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_SPHWW (60 kDa chaperonin OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=groL PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20 Identity = 51/113 (45.13%), Postives = 76/113 (67.26%), Query Frame = -1 Query: 212 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSGYG 547 ND++ G DI++RA+ P+K IA+NAG +G+VV+ +L ++ G+NAAT YE+L+AAG+IDPTKVVR L+ A+SVA + ++ + E+ E + PAMP G G G Sbjct: 433 NDDQTRGIDIIRRAISAPVKQIAQNAGQDGAVVAGNLLRENDETKGFNAATDVYENLVAAGVIDPTKVVRTALQDAASVAGLLITTEATIAELPEDKAPAMPGGGMGGMGGMG 545
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_CAUCR (60 kDa chaperonin OS=Caulobacter crescentus GN=groL PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20 Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = -1 Query: 230 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 550 DND++ G IV+RAL P++ IA+NAGV GS+V K+L +DN +G+NA T Y DL+ G+IDP KVVR L++A+SVA + ++ +VE + PAG M Sbjct: 432 DNDDQTAGIAIVRRALQAPIRQIAENAGVEGSIVVGKILENDNSAFGFNAQTEQYVDLVVDGVIDPAKVVRTALQNAASVAGLLITTEAAIVEAPKKGGGAPAGGGM 538
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_CAUCN (60 kDa chaperonin OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=groL PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20 Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = -1 Query: 230 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 550 DND++ G IV+RAL P++ IA+NAGV GS+V K+L +DN +G+NA T Y DL+ G+IDP KVVR L++A+SVA + ++ +VE + PAG M Sbjct: 432 DNDDQTAGIAIVRRALQAPIRQIAENAGVEGSIVVGKILENDNSAFGFNAQTEQYVDLVVDGVIDPAKVVRTALQNAASVAGLLITTEAAIVEAPKKGGGAPAGGGM 538
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_CAMHC (60 kDa chaperonin OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=groL PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20 Identity = 53/107 (49.53%), Postives = 71/107 (66.36%), Query Frame = -1 Query: 245 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 565 +KE L DE K+GADIVKRAL PL+ IA+NAG + V++ V + YG++AA G + ++ AGIIDP KV R L++A SVA L ++ V EIKE +PAMP Sbjct: 425 VKENLKGDE-KIGADIVKRALFAPLRQIAENAGFDAGVIANAVSINKEKAYGFDAACGEFVNMFEAGIIDPVKVERVALQNAVSVASLLLTTEATVSEIKEDKPAMP 530
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_SYNSC (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9605) GN=groL2 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20 Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = -1 Query: 209 EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 541 EE +GA+IV AL PL IA+NAG NG+VV+E V + + G+NAA+G Y D++AAGI+DP KV R L++A+S+A L ++C+V ++ E + A PAG M + Y Sbjct: 435 EELIGANIVAAALTAPLMRIAENAGANGAVVAENVKARAGAE-GFNAASGEYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAGGGMGGGDFDY 544
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20 Identity = 53/99 (53.54%), Postives = 71/99 (71.72%), Query Frame = -1 Query: 251 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPA 547 N EE+VGA+IV RAL PL IA NAG+ GSVV EKVL + +G++A TG Y D+ A GI+DP KVVR L++A+S+A +L ++ +VVE EP+PA Sbjct: 433 NAEEQVGAEIVYRALQAPLFQIAHNAGLEGSVVVEKVLEKEM-PFGFDALTGTYVDMFAQGIVDPAKVVRSALQNAASIAGMYLTTEAIVVEKPEPKPA 530
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_PROM1 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL1A) GN=groL2 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20 Identity = 51/104 (49.04%), Postives = 73/104 (70.19%), Query Frame = -1 Query: 230 EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 541 EE +GA+IV+ AL PL IA+NAG NG+VV+E V S + GYNAATG Y D+++AGI+DP KV R L++A+S+A L ++C+V ++ E + + PAG M Sbjct: 435 EELIGANIVEAALTSPLMRIAENAGANGAVVAENVKSKPVND-GYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDSSPAGGGM 537 The following BLAST results are available for this feature:
BLAST of DC887897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887897 ID=DC887897; Name=DC887897; organism=Citrus sinensis; type=EST; length=565bpback to top |