DC887897

Overview
NameDC887897
Unique NameDC887897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20
Identity = 50/104 (48.08%), Postives = 74/104 (71.15%), Query Frame = -1
Query:  254 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEP 565
            IKET+++ +E++GADI+++AL  P  LIA NAGV G VV EK+  S+  + GYNA T  YE+L+ +G+IDP KV R  L++A+SV+   L +  +VVE  +P+P
Sbjct:  429 IKETIEDHDERLGADIIQKALQAPASLIANNAGVEGEVVIEKIKESE-WEMGYNAMTDKYENLIESGVIDPAKVTRCALQNAASVSGMVLTTQAIVVEKPKPKP 531          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_ZYMMO (60 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20
Identity = 50/105 (47.62%), Postives = 74/105 (70.48%), Query Frame = -1
Query:  239 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKE--PEPAMPAG 547
            N++++ G DIV+RAL  P++ IA+NAG +G+VV+ K++  ++ K G+NA T  YEDL A G+IDPTKVVR  L+ A+SVA   + ++  V ++ E  P PAMP G
Sbjct:  433 NEDQQRGIDIVRRALQAPVRQIAQNAGFDGAVVAGKLIDGNDDKIGFNAQTEKYEDLAATGVIDPTKVVRTALQDAASVAGLLITTEAAVGDLPEDKPAPAMPGG 537          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_SYNR3 (60 kDa chaperonin OS=Synechococcus sp. (strain RCC307) GN=groL PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20
Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = -1
Query:  230 EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHK---YGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 541
            EE +GA+IV +AL  PLK IA+NAG NGSVV+E V     HK    G+NAA+  Y D++AAGIIDP KV R  L++A+S+A   L ++C+VV++ E + A PAG  M
Sbjct:  435 EELIGANIVAQALDAPLKRIAENAGANGSVVAENV----RHKPFSEGFNAASNEYVDMLAAGIIDPAKVTRSGLQNAASIAGMVLTTECIVVDLPEKKEAAPAGGGM 537          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_SPHWW (60 kDa chaperonin OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=groL PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20
Identity = 51/113 (45.13%), Postives = 76/113 (67.26%), Query Frame = -1
Query:  212 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSGYG 547
            ND++  G DI++RA+  P+K IA+NAG +G+VV+  +L  ++   G+NAAT  YE+L+AAG+IDPTKVVR  L+ A+SVA   + ++  + E+ E + PAMP G      G G
Sbjct:  433 NDDQTRGIDIIRRAISAPVKQIAQNAGQDGAVVAGNLLRENDETKGFNAATDVYENLVAAGVIDPTKVVRTALQDAASVAGLLITTEATIAELPEDKAPAMPGGGMGGMGGMG 545          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_CAUCR (60 kDa chaperonin OS=Caulobacter crescentus GN=groL PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20
Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = -1
Query:  230 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 550
            DND++  G  IV+RAL  P++ IA+NAGV GS+V  K+L +DN  +G+NA T  Y DL+  G+IDP KVVR  L++A+SVA   + ++  +VE  +     PAG  M
Sbjct:  432 DNDDQTAGIAIVRRALQAPIRQIAENAGVEGSIVVGKILENDNSAFGFNAQTEQYVDLVVDGVIDPAKVVRTALQNAASVAGLLITTEAAIVEAPKKGGGAPAGGGM 538          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_CAUCN (60 kDa chaperonin OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=groL PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20
Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = -1
Query:  230 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 550
            DND++  G  IV+RAL  P++ IA+NAGV GS+V  K+L +DN  +G+NA T  Y DL+  G+IDP KVVR  L++A+SVA   + ++  +VE  +     PAG  M
Sbjct:  432 DNDDQTAGIAIVRRALQAPIRQIAENAGVEGSIVVGKILENDNSAFGFNAQTEQYVDLVVDGVIDPAKVVRTALQNAASVAGLLITTEAAIVEAPKKGGGAPAGGGM 538          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_CAMHC (60 kDa chaperonin OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=groL PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20
Identity = 53/107 (49.53%), Postives = 71/107 (66.36%), Query Frame = -1
Query:  245 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 565
            +KE L  DE K+GADIVKRAL  PL+ IA+NAG +  V++  V  +    YG++AA G + ++  AGIIDP KV R  L++A SVA   L ++  V EIKE +PAMP
Sbjct:  425 VKENLKGDE-KIGADIVKRALFAPLRQIAENAGFDAGVIANAVSINKEKAYGFDAACGEFVNMFEAGIIDPVKVERVALQNAVSVASLLLTTEATVSEIKEDKPAMP 530          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_SYNSC (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9605) GN=groL2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20
Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = -1
Query:  209 EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 541
            EE +GA+IV  AL  PL  IA+NAG NG+VV+E V +    + G+NAA+G Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG  M    + Y
Sbjct:  435 EELIGANIVAAALTAPLMRIAENAGANGAVVAENVKARAGAE-GFNAASGEYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAGGGMGGGDFDY 544          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20
Identity = 53/99 (53.54%), Postives = 71/99 (71.72%), Query Frame = -1
Query:  251 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPA 547
            N EE+VGA+IV RAL  PL  IA NAG+ GSVV EKVL  +   +G++A TG Y D+ A GI+DP KVVR  L++A+S+A  +L ++ +VVE  EP+PA
Sbjct:  433 NAEEQVGAEIVYRALQAPLFQIAHNAGLEGSVVVEKVLEKEM-PFGFDALTGTYVDMFAQGIVDPAKVVRSALQNAASIAGMYLTTEAIVVEKPEPKPA 530          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_PROM1 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL1A) GN=groL2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20
Identity = 51/104 (49.04%), Postives = 73/104 (70.19%), Query Frame = -1
Query:  230 EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 541
            EE +GA+IV+ AL  PL  IA+NAG NG+VV+E V S   +  GYNAATG Y D+++AGI+DP KV R  L++A+S+A   L ++C+V ++ E + + PAG  M
Sbjct:  435 EELIGANIVEAALTSPLMRIAENAGANGAVVAENVKSKPVND-GYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDSSPAGGGM 537          
The following BLAST results are available for this feature:
BLAST of DC887897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBA_WHEAT1.011e-2048.08RuBisCO large subunit-binding protein subunit alph... [more]
CH60_ZYMMO1.011e-2047.6260 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=... [more]
CH60_SYNR31.011e-2051.4060 kDa chaperonin OS=Synechococcus sp. (strain RCC... [more]
CH60_SPHWW1.011e-2045.1360 kDa chaperonin OS=Sphingomonas wittichii (strai... [more]
CH60_CAUCR1.011e-2045.7960 kDa chaperonin OS=Caulobacter crescentus GN=gro... [more]
CH60_CAUCN1.011e-2045.7960 kDa chaperonin OS=Caulobacter crescentus (strai... [more]
CH60_CAMHC1.011e-2049.5360 kDa chaperonin OS=Campylobacter hominis (strain... [more]
CH602_SYNSC1.011e-2045.9560 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH602_SYNJB1.011e-2053.5460 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]
CH602_PROM11.011e-2049.0460 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]

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Properties
Property NameValue
Genbank descriptionDC887897 EIC Citrus sinensis cDNA clone EIC1072 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887897 ID=DC887897; Name=DC887897; organism=Citrus sinensis; type=EST; length=565bp
AGAAATCATTGCAATTGTACATCTAATTGCAAATTAATACGAGCCGTACT
CTGGCAAGCTATCCTCACCAGAATCCATAAACTCTACTAAGTCNAGTAAT
TGAATTTACAAGAAGAAGAGAACCCAACGCTGTCAAACTGAAAGATAGTT
GCTATAACGAANTCAGAACCTTATTTGCTTGCCTCCCGTGACCTTGTTAA
TTAGCTTAGTATCCATATCCTGAGTTGTCCATAGGGTTACCCGCAGGCAT
AGCGGGTTCAGGCTCCTTGATCTCAACCACCACACAGTCGGACATCAAGA
AGGTTTTTGCCACCGAGGAAGCATGCTCCAAGCANCATCTAACCACCTTG
GTAGGATCAATAATTCCTGCAGCCATTAGATCTTCGTAGTTTCCAGTTGC
AGCATTGTATCCATATTTATGATTGTCACTTGAAAGCACCTTCTCGCTGA
CCACACTTCCATTAACACCGGCATTTTTGGCAATTAATTTCAGTGGGTAG
CACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTATC
AAGGGTTTCCTTAAT
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