DC887897

Overview
NameDC887897
Unique NameDC887897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH601_PROM3 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9303) GN=groL1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.724e-20
Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = -1
Query:  239 EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 541
            EE +GA+IV+ +L  PL  IA+NAG NG+VV+E V S      GYNAATG+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG
Sbjct:  435 EELIGANIVEASLAAPLMRIAENAGANGAVVAENVKSRPISD-GYNAATGDYIDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAG 534          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.724e-20
Identity = 57/109 (52.29%), Postives = 72/109 (66.06%), Query Frame = -1
Query:  218 DEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 544
            DEEKVGAD+V  AL  PL  IA NAG  G+VV EKV  +D   YGYNA T  YED++AAG++DP KVVR  L++A S+A   L ++ +VV+  +PEPA  A   M   G
Sbjct:  433 DEEKVGADLVGIALEAPLTQIADNAGKEGAVVVEKVRDAD-FSYGYNAMTDTYEDMIAAGVVDPAKVVRSGLQNAGSIAGMVLTTEALVVD--KPEPAGAAAPDMGGMG 538          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.252e-20
Identity = 51/108 (47.22%), Postives = 76/108 (70.37%), Query Frame = -1
Query:  242 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 565
            IKE L++ +E++GADIV++AL  P  LIA+NAG+ G VV EK+ + +  + GYNA T  YE+L+ +G+IDP KV R  L++A+SVA   L +  +VVE  +P+ A+ A
Sbjct:  474 IKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGE-WEVGYNAMTDTYENLVESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAAVAA 580          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_PELLD (60 kDa chaperonin OS=Pelodictyon luteolum (strain DSM 273) GN=groL PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.252e-20
Identity = 52/114 (45.61%), Postives = 74/114 (64.91%), Query Frame = -1
Query:  212 DNDEEKVGADIVKRALCYPLKLIAKNAGV-NGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 550
            DN+++K G DI++RAL  PL+ I  N G  +G+VV E+V   +   +G+NA T  YEDL+AAG++DPTKV R  LE+A+SVA   L ++  + +IKE +  MPA  P    G G
Sbjct:  432 DNEDQKTGIDIIRRALEEPLRQIVANTGTTDGAVVLERVKQGEGD-FGFNARTEQYEDLVAAGVVDPTKVTRSALENAASVASILLTTEACITDIKEDKSDMPAMPPGGMGGMG 544          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_DESVV (60 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groL PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.252e-20
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = -1
Query:  218 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 547
            +D+E  G +I++RA+  PL+ IA NAG  GS+V E+V    +  +G+NAATG YEDL+  G+IDP KV R  L++A+SVA   L ++C + E  EP+  MP    M   G
Sbjct:  433 DDDETAGVNIIRRAIEEPLRQIASNAGFEGSIVVERVREGKDG-FGFNAATGEYEDLIGVGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEPKKDMPMPGGMGGMG 541          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_DESVH (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groL PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.252e-20
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = -1
Query:  218 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 547
            +D+E  G +I++RA+  PL+ IA NAG  GS+V E+V    +  +G+NAATG YEDL+  G+IDP KV R  L++A+SVA   L ++C + E  EP+  MP    M   G
Sbjct:  433 DDDETAGVNIIRRAIEEPLRQIASNAGFEGSIVVERVREGKDG-FGFNAATGEYEDLIGVGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEPKKDMPMPGGMGGMG 541          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_AQUAE (60 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.252e-20
Identity = 50/99 (50.51%), Postives = 71/99 (71.72%), Query Frame = -1
Query:  263 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHK---YGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKE 550
            DN ++++G DI+K+A+  PLK IA NAG +GSVV EKV+     K   +G+NAATG Y D+  AGIIDPTKVVR  +E+A+SVA T L ++ ++ ++ E
Sbjct:  432 DNHDQQLGIDIIKKAVRTPLKQIAYNAGYDGSVVLEKVIELGKEKGVSWGFNAATGEYVDMYEAGIIDPTKVVRTAIENAASVAGTMLTAEALIADLPE 530          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.252e-20
Identity = 51/101 (50.50%), Postives = 74/101 (73.27%), Query Frame = -1
Query:  239 EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 541
            EEK+GA I+++AL  PL+ IA+NAG+ GSV++EKV + +   +G+NA T  YEDL+AAGIIDP KV R  L++A+S+A   L ++C+VV+ K  +   PAG
Sbjct:  434 EEKIGARIIQKALEGPLRQIAENAGLEGSVIAEKVRNLE-FNFGFNAMTNEYEDLVAAGIIDPVKVTRSALQNAASIAAMVLTTECIVVD-KPEDDKTPAG 532          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_DESDG (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain G20) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.941e-20
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = -1
Query:  218 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVE-IKEPEPAMPAGNPMDNSG 547
            +D+E  G  I++RA+  PL+ IA NAG  GS++ EKV    +  +G+NAATG +EDL+AAG+IDP KV R  L++A+SVA   L ++C + E  KE  PA PA   M   G
Sbjct:  433 DDDEAAGVTIIRRAIEEPLRQIAANAGFEGSIICEKVKEGKD-AFGFNAATGEFEDLIAAGVIDPKKVSRIALQNAASVASLLLTTECAIAEKPKEDAPAAPAMGGMGGMG 542          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_CLOPH (60 kDa chaperonin OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.941e-20
Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = -1
Query:  233 EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 541
            +E+ GA I+ +AL  PL  IA+NAG+ G+V+  KV        G+NA T  Y D++  GI+DP+KV R  L++A+SVA TFL ++  V  IKEP PAMPAG P
Sbjct:  434 DERTGAQIILKALEAPLSCIAQNAGLEGAVIVNKVREKKTG-VGFNALTEKYVDMVEDGILDPSKVTRSALQNATSVASTFLTTEAAVASIKEPAPAMPAGGP 535          
The following BLAST results are available for this feature:
BLAST of DC887897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_PROM31.724e-2050.5060 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_ACAM11.724e-2052.2960 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
RUBA_PEA2.252e-2047.22RuBisCO large subunit-binding protein subunit alph... [more]
CH60_PELLD2.252e-2045.6160 kDa chaperonin OS=Pelodictyon luteolum (strain ... [more]
CH60_DESVV2.252e-2044.5560 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH60_DESVH2.252e-2044.5560 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH60_AQUAE2.252e-2050.5160 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3... [more]
CH601_GLOVI2.252e-2050.5060 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH60_DESDG2.941e-2046.8560 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH60_CLOPH2.941e-2048.5460 kDa chaperonin OS=Clostridium phytofermentans (... [more]

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Properties
Property NameValue
Genbank descriptionDC887897 EIC Citrus sinensis cDNA clone EIC1072 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887897 ID=DC887897; Name=DC887897; organism=Citrus sinensis; type=EST; length=565bp
AGAAATCATTGCAATTGTACATCTAATTGCAAATTAATACGAGCCGTACT
CTGGCAAGCTATCCTCACCAGAATCCATAAACTCTACTAAGTCNAGTAAT
TGAATTTACAAGAAGAAGAGAACCCAACGCTGTCAAACTGAAAGATAGTT
GCTATAACGAANTCAGAACCTTATTTGCTTGCCTCCCGTGACCTTGTTAA
TTAGCTTAGTATCCATATCCTGAGTTGTCCATAGGGTTACCCGCAGGCAT
AGCGGGTTCAGGCTCCTTGATCTCAACCACCACACAGTCGGACATCAAGA
AGGTTTTTGCCACCGAGGAAGCATGCTCCAAGCANCATCTAACCACCTTG
GTAGGATCAATAATTCCTGCAGCCATTAGATCTTCGTAGTTTCCAGTTGC
AGCATTGTATCCATATTTATGATTGTCACTTGAAAGCACCTTCTCGCTGA
CCACACTTCCATTAACACCGGCATTTTTGGCAATTAATTTCAGTGGGTAG
CACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTATC
AAGGGTTTCCTTAAT
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