CN185481

Overview
NameCN185481
Unique NameCN185481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185481 vs. ExPASy Swiss-Prot
Match: COG6_ASPTN (Conserved oligomeric Golgi complex subunit 6 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=cog6 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13
Identity = 45/173 (26.01%), Postives = 83/173 (47.98%), Query Frame = 1
Query:  115 QTLSTFYEENTPHARGTLRSTI*KRALSINLDFXXXXXXXXXXXXXVEEEVNSLAECCDRIEKALNSCNATTGFIIETTERLKGELDVNTRRQEIVSCFLRDYQLSNEEINALR--DEDLDESFFKALAHVQEIHANCKVLLMTHHQRAGLELMDMMAMYQEGANERLCGWVQ 627
            +TLS     NT   R  LR  + K  +  N +              +   ++SL + C+ ++K +      T  ++E    L  +      +Q+++  F + + +S E++  L   +E +DE FF  L+ V+++H +C+VLL   +QR GLELM+  +     A ++L  W+Q
Sbjct:   59 ETLSLRGIHNTAEVRRQLRLDVQKEVVDSNAEIVRDFGKVAEQLKRIGTVISSLNQTCEEMKKHIVLAKQDTTPVLEEAASLMNQKREAETKQQLLDAFTKHFIVSEEDLLILTSAEEPIDERFFDLLSRVKQVHRDCEVLLGGENQRLGLELMEKSSRNLNSAYQKLYKWIQ 231          
BLAST of CN185481 vs. ExPASy Swiss-Prot
Match: COG6_ASPNC (Conserved oligomeric Golgi complex subunit 6 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=cog6 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 43/173 (24.86%), Postives = 82/173 (47.40%), Query Frame = 1
Query:  115 QTLSTFYEENTPHARGTLRSTI*KRALSINLDFXXXXXXXXXXXXXVEEEVNSLAECCDRIEKALNSCNATTGFIIETTERLKGELDVNTRRQEIVSCFLRDYQLSNEEINALR--DEDLDESFFKALAHVQEIHANCKVLLMTHHQRAGLELMDMMAMYQEGANERLCGWVQ 627
            +TLS     NT   R  LR  + K  +  N +              +   + +L + CD + K + S    T  ++E    L  +      +QE++  F + + + +E++  L   +E +D+ FF+ LA V++++ +C+ LL   ++R GLELM+  +     A ++L  W+Q
Sbjct:   60 ETLSLRGIHNTAEVRRQLRLDVQKEVVDSNAEIVRDFGLVAEQLKRIGTVITNLNQTCDEMRKHIVSARQETTPVLEEASALMKQRKEAETKQELLEAFTQHFIVPDEDLLILTHAEEPIDDHFFEILARVKQVYRDCEALLGGENERLGLELMEKSSRSLNSAYQKLYRWIQ 232          
BLAST of CN185481 vs. ExPASy Swiss-Prot
Match: COG6_COCIM (Conserved oligomeric Golgi complex subunit 6 OS=Coccidioides immitis GN=COG6 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 44/173 (25.43%), Postives = 79/173 (45.66%), Query Frame = 1
Query:  115 QTLSTFYEENTPHARGTLRSTI*KRALSINLDFXXXXXXXXXXXXXVEEEVNSLAECCDRIEKALNSCNATTGFIIETTERLKGELDVNTRRQEIVSCFLRDYQLSNEEINALRD--EDLDESFFKALAHVQEIHANCKVLLMTHHQRAGLELMDMMAMYQEGANERLCGWVQ 627
            +TL     +NT   R TLR  I K  +  N                +   ++ L   C+ + + + S    T  ++E    L  +      +Q ++  F + + LS+++I+ L    E +D+ FF+ L+  + IH +C+VLL   +QR GLE+M+  +     A  +L  W+Q
Sbjct:   35 ETLDKRGLQNTAETRRTLRLDIQKEVIDSNGSIIQDFGKVAEQLSRIGAAISHLNTICEDMRQHITSARQETEPVLEEAAALLSQKQEVETKQHLLDAFNKHFVLSSDDISILTSTAEPVDDRFFQILSRQKRIHKDCEVLLGGENQRLGLEIMEQSSKNLNSAFMKLYKWIQ 207          
The following BLAST results are available for this feature:
BLAST of CN185481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COG6_ASPTN4.294e-1326.01Conserved oligomeric Golgi complex subunit 6 OS=As... [more]
COG6_ASPNC3.635e-1224.86Conserved oligomeric Golgi complex subunit 6 OS=As... [more]
COG6_COCIM4.019e-1125.43Conserved oligomeric Golgi complex subunit 6 OS=Co... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185481 ID=CN185481; Name=CN185481; organism=Citrus sinensis; type=EST; length=628bp
GTTTTTTCAGTCTGTTCGGGGAGAATCGGAAATGGCATTACCTCCAGGGC
TTTCTTGGAAGCTGAAGAAAGTACTAGAATCAAGAACAGAAACTCCCGAT
CTGCTGGCTTCGCTCAAACGCTTTCTACTTTCTACGAAGAAAACACTCCA
CACGCGCGTGGCACCCTCAGATCCACCATCTAAAAGCGTGCACTCTCCAT
CAATCTCGATTTCCTCCAAGCCTCAAGCGCCGCTCAACAAGCTCTGGATC
AAGTTGAAGAGGAGGTTAATTCGCTCGCTGAATGCTGTGACAGGATTGAG
AAGGCATTGAATAGTTGTAATGCTACCACTGGTTTTATTATCGAAACCAC
AGAGAGGCTCAAGGGGGAGCTTGATGTGAATACGCGGAGACAAGAGATTG
TTTCATGCTTTCTTCGTGATTATCAGCTCTCTAATGAAGAGATAAATGCA
CTGAGAGACGAAGACCTAGATGAAAGTTTCTTTAAGGCGCTTGCACATGT
TCAAGAGATTCACGCCAACTGCAAAGTTCTGTTAATGACACATCACCAGC
GTGCAGGTTTGGAGCTGATGGATATGATGGCTATGTACCAAGAAGGAGCC
AATGAGCGCCTTTGCGGGTGGGTTCAGG
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