CN185479 | Citrus Genome Database

Overview


Name	CN185479
Unique Name	CN185479
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	577

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CN185479_ssr300	microsatellite	CN185479_ssr300:300..314.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig760	contig	Csv1_Contig760:78..651.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNJA2_HUMAN (DnaJ homolog subfamily A member 2 OS=Homo sapiens GN=DNAJA2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.509e-31
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 3

Query:   90 KYYEILGVSKNASQDDLKKAYREAAIQNHPDKGGDP-EKFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            K Y+ILGV   AS+++LKKAYR+ A + HPDK  +  +KFKE++ AYEVLS+P+KRE+YD+YGE  L+E
Sbjct:    8 KLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLRE 76

HSP 2 Score: 70.0922 bits (170), Expect = 6.509e-31
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGASMKCSGCQGSGMTV 573
            D++HPL+ S+EDLY G + KL LS+N +C+ C G+G KSGA  KCS C+G G+ +
Sbjct:  115 DMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRI 169

[Close]

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNJA2_BOVIN (DnaJ homolog subfamily A member 2 OS=Bos taurus GN=DNAJA2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.509e-31
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 3

Query:   90 KYYEILGVSKNASQDDLKKAYREAAIQNHPDKGGDP-EKFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            K Y+ILGV   AS+++LKKAYR+ A + HPDK  +  +KFKE++ AYEVLS+P+KRE+YD+YGE  L+E
Sbjct:    8 KLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLRE 76

HSP 2 Score: 70.0922 bits (170), Expect = 6.509e-31
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGASMKCSGCQGSGMTV 573
            D++HPL+ S+EDLY G + KL LS+N +C+ C G+G KSGA  KCS C+G G+ +
Sbjct:  115 DMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRI 169

[Close]

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNJA1_PONAB (DnaJ homolog subfamily A member 1 OS=Pongo abelii GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.872e-30
Identity = 41/68 (60.29%), Postives = 57/68 (83.82%), Query Frame = 3

Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPEKFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YY++LGV  NA+Q++LKKAYR+ A++ HPDK   + EKFK+++QAYEVLSD +KRE+YD+ GE A+KE
Sbjct:    7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKE 74

HSP 2 Score: 62.7734 bits (151), Expect = 1.872e-30
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGASMKCSGCQGSGMTV 573
            +V+H L  ++EDLY G ++KL+L +N +C KC G+G K GA   C  C+G+GM +
Sbjct:  105 NVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQI 159

[Close]

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNJA1_HUMAN (DnaJ homolog subfamily A member 1 OS=Homo sapiens GN=DNAJA1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.872e-30
Identity = 41/68 (60.29%), Postives = 57/68 (83.82%), Query Frame = 3

Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPEKFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YY++LGV  NA+Q++LKKAYR+ A++ HPDK   + EKFK+++QAYEVLSD +KRE+YD+ GE A+KE
Sbjct:    7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKE 74

HSP 2 Score: 62.7734 bits (151), Expect = 1.872e-30
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGASMKCSGCQGSGMTV 573
            +V+H L  ++EDLY G ++KL+L +N +C KC G+G K GA   C  C+G+GM +
Sbjct:  106 NVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQI 160

[Close]

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ1_CERAE (DnaJ homolog subfamily A member 1 OS=Cercopithecus aethiops GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.872e-30
Identity = 41/68 (60.29%), Postives = 57/68 (83.82%), Query Frame = 3

Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPEKFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YY++LGV  NA+Q++LKKAYR+ A++ HPDK   + EKFK+++QAYEVLSD +KRE+YD+ GE A+KE
Sbjct:    7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKE 74

HSP 2 Score: 62.7734 bits (151), Expect = 1.872e-30
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGASMKCSGCQGSGMTV 573
            +V+H L  ++EDLY G ++KL+L +N +C KC G+G K GA   C  C+G+GM +
Sbjct:  106 NVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQI 160

[Close]

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNJA1_BOVIN (DnaJ homolog subfamily A member 1 OS=Bos taurus GN=DNAJA1 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.438e-30
Identity = 41/68 (60.29%), Postives = 57/68 (83.82%), Query Frame = 3

Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPEKFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YY++LGV  NA+Q++LKKAYR+ A++ HPDK   + EKFK+++QAYEVLSD +KRE+YD+ GE A+KE
Sbjct:    7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKE 74

HSP 2 Score: 62.3882 bits (150), Expect = 2.438e-30
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGASMKCSGCQGSGMTV 573
            +V+H L  ++EDLY G ++KL+L +N +C KC G+G K GA   C  C+G+GM +
Sbjct:  106 NVVHQLTVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQI 160

[Close]

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNJA1_RAT (DnaJ homolog subfamily A member 1 OS=Rattus norvegicus GN=Dnaja1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.133e-30
Identity = 40/68 (58.82%), Postives = 57/68 (83.82%), Query Frame = 3

Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPEKFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YY++LGV  NA+Q++LKKAYR+ A++ HPDK   + EKFK+++QAYEVL+D +KRE+YD+ GE A+KE
Sbjct:    7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKRELYDKGGEQAIKE 74

HSP 2 Score: 62.7734 bits (151), Expect = 4.133e-30
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGASMKCSGCQGSGMTV 573
            +V+H L  ++EDLY G ++KL+L +N +C KC G+G K GA   C  C+G+GM +
Sbjct:  106 NVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQI 160

[Close]

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNJA1_MOUSE (DnaJ homolog subfamily A member 1 OS=Mus musculus GN=Dnaja1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.133e-30
Identity = 40/68 (58.82%), Postives = 57/68 (83.82%), Query Frame = 3

Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPEKFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YY++LGV  NA+Q++LKKAYR+ A++ HPDK   + EKFK+++QAYEVL+D +KRE+YD+ GE A+KE
Sbjct:    7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKRELYDKGGEQAIKE 74

HSP 2 Score: 62.7734 bits (151), Expect = 4.133e-30
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGASMKCSGCQGSGMTV 573
            +V+H L  ++EDLY G ++KL+L +N +C KC G+G K GA   C  C+G+GM +
Sbjct:  106 NVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQI 160

[Close]

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: MAS5_SCHPO (Mitochondrial protein import protein mas5 OS=Schizosaccharomyces pombe GN=SPBC1734.11 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.054e-25
Identity = 35/68 (51.47%), Postives = 52/68 (76.47%), Query Frame = 3

Query:   90 KYYEILGVSKNASQDDLKKAYREAAIQNHPDKGGDP-EKFKELAQAYEVLSDPQKREIYDQYGEDALK 290
            K YE+L V   ASQ +LKKAYR+ A++ HPDK  +  +KFKE+++AYE+L+D +KR  YD++GE+ L+
Sbjct:    6 KLYEVLNVDVTASQAELKKAYRKLALKYHPDKNPNAGDKFKEISRAYEILADEEKRATYDRFGEEGLQ 73

HSP 2 Score: 59.3066 bits (142), Expect = 2.054e-25
Identity = 22/53 (41.51%), Postives = 37/53 (69.81%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGASMKCSGCQGSGM 567
            D++H ++ ++EDLY+G + KL+L +  +C KC G+G K G+   C+ C GSG+
Sbjct:  109 DLVHTIKVTLEDLYRGKTTKLALQKKVICPKCSGRGGKEGSVKSCASCNGSGV 161

[Close]

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_HALOH (Chaperone protein dnaJ OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.279e-22
Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 3

Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKGGDP----EKFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEILGVS++A Q ++KKAYR  A + HPD   D     EKFKE+++AYE+LSDP KR  YDQYG   + E
Sbjct:    7 YYEILGVSRDADQKEIKKAYRRLARKYHPDINKDDPDAEEKFKEISEAYEILSDPDKRARYDQYGHAGINE 77

HSP 2 Score: 43.1282 bits (100), Expect = 3.279e-22
Identity = 21/53 (39.62%), Postives = 30/53 (56.60%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGASMK-CSGCQGSG 564
            D+ + ++   ED   GT+KK+++ R   C  C G G+K G S K C  C GSG
Sbjct:  117 DLQYRMKIPFEDAAFGTTKKITIPRTETCDTCNGTGAKPGTSPKTCPQCNGSG 169

The following BLAST results are available for this feature:

BLAST of CN185479 vs. ExPASy Swiss-Prot

BLAST of CN185479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
DNJA2_HUMAN	6.509e-31	57.97	DnaJ homolog subfamily A member 2 OS=Homo sapiens ...	[more]
DNJA2_BOVIN	6.509e-31	57.97	DnaJ homolog subfamily A member 2 OS=Bos taurus GN...	[more]
DNJA1_PONAB	1.872e-30	60.29	DnaJ homolog subfamily A member 1 OS=Pongo abelii ...	[more]
DNJA1_HUMAN	1.872e-30	60.29	DnaJ homolog subfamily A member 1 OS=Homo sapiens ...	[more]
DNAJ1_CERAE	1.872e-30	60.29	DnaJ homolog subfamily A member 1 OS=Cercopithecus...	[more]
DNJA1_BOVIN	2.438e-30	60.29	DnaJ homolog subfamily A member 1 OS=Bos taurus GN...	[more]
DNJA1_RAT	4.133e-30	58.82	DnaJ homolog subfamily A member 1 OS=Rattus norveg...	[more]
DNJA1_MOUSE	4.133e-30	58.82	DnaJ homolog subfamily A member 1 OS=Mus musculus ...	[more]
MAS5_SCHPO	2.054e-25	51.47	Mitochondrial protein import protein mas5 OS=Schiz...	[more]
DNAJ_HALOH	3.279e-22	56.34	Chaperone protein dnaJ OS=Halothermothrix orenii (...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS05_0001G11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN185479 ID=CN185479; Name=CN185479; organism=Citrus sinensis; type=EST; length=577bp
AGTGCCGTCTCGCGTCTACTCTGAAGATCTGAAATTTTTCTAGATACAAG
AAGATGTTCGGAAGAGCGCCCAAGAAAAGCGATAACCCAAAGTACTATGA
GATTCTCGGAGTCTCGAAAAACGCTTCGCAAGATGATCTGAAGAAGGCTT
ATAGGGAAGCCGCCATCCAAAACCATCCTGACAAGGGCGGTGATCCTGAG
AAGTTTAAAGAGTTGGCGCAAGCGTATGAGGTTCTGAGTGACCCCCAGAA
GCGTGAGATATATGATCAATACGGCGAGGATGCGCTTAAAGAGGGAATGG
GTGGTGGTGGTGGTGCCCATGACCCATTCGACATATTCCAATCCTTCTTC
CGTGGCAGCCCATTTGGGGGTGGGAGCAGCAGAGGAGAGAAGGCGAAGGA
GGGGAGAGGACGTACTCCATCCCCTCGAGGGTTCGGTGGAGGATCTGTAC
AAGGGGACATCTAAGAAGCTCTCGCTCTCCCGCAATGGAGTCTGCACCAA
GTGCAGAGGGAAGGGGTCTAAGTCAGGGGCATCGATGAAATGTTCTGGGT
GCCAGGGATCTGGAATGACAGTTTCAA