CN185479 | Citrus Genome Database

Overview


Name	CN185479
Unique Name	CN185479
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	577

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CN185479_ssr300	microsatellite	CN185479_ssr300:300..314.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig760	contig	Csv1_Contig760:78..651.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_FRATH (Chaperone protein dnaJ OS=Francisella tularensis subsp. holarctica (strain LVS) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-19
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 3

Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEIL +SK AS  ++K+AYR+ A++ HPD+  GD E   KFKE+++AYE+LSD  KR  YDQ+G   + +
Sbjct:    6 YYEILNISKTASGVEIKRAYRKLAMKYHPDRNPGDKEAEIKFKEISEAYEILSDDSKRSRYDQFGHAGVNQ 76

HSP 2 Score: 42.3578 bits (98), Expect = 1.389e-19
Identity = 18/52 (34.62%), Postives = 29/52 (55.77%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGASMKCSGCQGSG 564
            D+ + LE ++E+ + G  K++++ R   C  C G GSKS +   C  C G G
Sbjct:  112 DLEYTLEITLEEAFFGVEKEITIPRMESCDSCDGTGSKSRSKTTCHACHGQG 163

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_SHISS (Chaperone protein dnaJ OS=Shigella sonnei (strain Ss046) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.806e-19
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 3

Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEILGVSK A + ++KKAY+  A++ HPD+  GD E   KFKE+ +AYEVL+D QKR  YDQYG  A ++
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 76

HSP 2 Score: 35.4242 bits (80), Expect = 1.806e-19
Identity = 16/53 (30.19%), Postives = 28/53 (52.83%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGAS-MKCSGCQGSG 564
            D+ + +E ++E+  +G +K++ +     C  C G G+K G     C  C GSG
Sbjct:  116 DLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSG 168

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_SHIDS (Chaperone protein dnaJ OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.806e-19
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 3

Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEILGVSK A + ++KKAY+  A++ HPD+  GD E   KFKE+ +AYEVL+D QKR  YDQYG  A ++
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 76

HSP 2 Score: 35.4242 bits (80), Expect = 1.806e-19
Identity = 16/53 (30.19%), Postives = 28/53 (52.83%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGAS-MKCSGCQGSG 564
            D+ + +E ++E+  +G +K++ +     C  C G G+K G     C  C GSG
Sbjct:  116 DLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSG 168

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_SHIBS (Chaperone protein dnaJ OS=Shigella boydii serotype 4 (strain Sb227) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.806e-19
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 3

Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEILGVSK A + ++KKAY+  A++ HPD+  GD E   KFKE+ +AYEVL+D QKR  YDQYG  A ++
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 76

HSP 2 Score: 35.4242 bits (80), Expect = 1.806e-19
Identity = 16/53 (30.19%), Postives = 28/53 (52.83%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGAS-MKCSGCQGSG 564
            D+ + +E ++E+  +G +K++ +     C  C G G+K G     C  C GSG
Sbjct:  116 DLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSG 168

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_SHIB3 (Chaperone protein dnaJ OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.806e-19
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 3

Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEILGVSK A + ++KKAY+  A++ HPD+  GD E   KFKE+ +AYEVL+D QKR  YDQYG  A ++
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 76

HSP 2 Score: 35.4242 bits (80), Expect = 1.806e-19
Identity = 16/53 (30.19%), Postives = 28/53 (52.83%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGAS-MKCSGCQGSG 564
            D+ + +E ++E+  +G +K++ +     C  C G G+K G     C  C GSG
Sbjct:  116 DLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSG 168

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_ESCF3 (Chaperone protein dnaJ OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.806e-19
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 3

Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEILGVSK A + ++KKAY+  A++ HPD+  GD E   KFKE+ +AYEVL+D QKR  YDQYG  A ++
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 76

HSP 2 Score: 35.4242 bits (80), Expect = 1.806e-19
Identity = 16/53 (30.19%), Postives = 28/53 (52.83%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGAS-MKCSGCQGSG 564
            D+ + +E ++E+  +G +K++ +     C  C G G+K G     C  C GSG
Sbjct:  116 DLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSG 168

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_ECOUT (Chaperone protein dnaJ OS=Escherichia coli (strain UTI89 / UPEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.806e-19
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 3

Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEILGVSK A + ++KKAY+  A++ HPD+  GD E   KFKE+ +AYEVL+D QKR  YDQYG  A ++
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 76

HSP 2 Score: 35.4242 bits (80), Expect = 1.806e-19
Identity = 16/53 (30.19%), Postives = 28/53 (52.83%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGAS-MKCSGCQGSG 564
            D+ + +E ++E+  +G +K++ +     C  C G G+K G     C  C GSG
Sbjct:  116 DLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSG 168

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_ECOSM (Chaperone protein dnaJ OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.806e-19
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 3

Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEILGVSK A + ++KKAY+  A++ HPD+  GD E   KFKE+ +AYEVL+D QKR  YDQYG  A ++
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 76

HSP 2 Score: 35.4242 bits (80), Expect = 1.806e-19
Identity = 16/53 (30.19%), Postives = 28/53 (52.83%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGAS-MKCSGCQGSG 564
            D+ + +E ++E+  +G +K++ +     C  C G G+K G     C  C GSG
Sbjct:  116 DLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSG 168

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_ECOSE (Chaperone protein dnaJ OS=Escherichia coli (strain SE11) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.806e-19
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 3

Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEILGVSK A + ++KKAY+  A++ HPD+  GD E   KFKE+ +AYEVL+D QKR  YDQYG  A ++
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 76

HSP 2 Score: 35.4242 bits (80), Expect = 1.806e-19
Identity = 16/53 (30.19%), Postives = 28/53 (52.83%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGAS-MKCSGCQGSG 564
            D+ + +E ++E+  +G +K++ +     C  C G G+K G     C  C GSG
Sbjct:  116 DLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSG 168

BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_ECOLU (Chaperone protein dnaJ OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.806e-19
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 3

Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEILGVSK A + ++KKAY+  A++ HPD+  GD E   KFKE+ +AYEVL+D QKR  YDQYG  A ++
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 76

HSP 2 Score: 35.4242 bits (80), Expect = 1.806e-19
Identity = 16/53 (30.19%), Postives = 28/53 (52.83%), Query Frame = 1

Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGAS-MKCSGCQGSG 564
            D+ + +E ++E+  +G +K++ +     C  C G G+K G     C  C GSG
Sbjct:  116 DLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSG 168

The following BLAST results are available for this feature:

BLAST of CN185479 vs. ExPASy Swiss-Prot

BLAST of CN185479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
DNAJ_FRATH	1.389e-19	50.70	Chaperone protein dnaJ OS=Francisella tularensis s...	[more]
DNAJ_SHISS	1.806e-19	56.34	Chaperone protein dnaJ OS=Shigella sonnei (strain ...	[more]
DNAJ_SHIDS	1.806e-19	56.34	Chaperone protein dnaJ OS=Shigella dysenteriae ser...	[more]
DNAJ_SHIBS	1.806e-19	56.34	Chaperone protein dnaJ OS=Shigella boydii serotype...	[more]
DNAJ_SHIB3	1.806e-19	56.34	Chaperone protein dnaJ OS=Shigella boydii serotype...	[more]
DNAJ_ESCF3	1.806e-19	56.34	Chaperone protein dnaJ OS=Escherichia fergusonii (...	[more]
DNAJ_ECOUT	1.806e-19	56.34	Chaperone protein dnaJ OS=Escherichia coli (strain...	[more]
DNAJ_ECOSM	1.806e-19	56.34	Chaperone protein dnaJ OS=Escherichia coli (strain...	[more]
DNAJ_ECOSE	1.806e-19	56.34	Chaperone protein dnaJ OS=Escherichia coli (strain...	[more]
DNAJ_ECOLU	1.806e-19	56.34	Chaperone protein dnaJ OS=Escherichia coli O17:K52...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS05_0001G11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN185479 ID=CN185479; Name=CN185479; organism=Citrus sinensis; type=EST; length=577bp
AGTGCCGTCTCGCGTCTACTCTGAAGATCTGAAATTTTTCTAGATACAAG
AAGATGTTCGGAAGAGCGCCCAAGAAAAGCGATAACCCAAAGTACTATGA
GATTCTCGGAGTCTCGAAAAACGCTTCGCAAGATGATCTGAAGAAGGCTT
ATAGGGAAGCCGCCATCCAAAACCATCCTGACAAGGGCGGTGATCCTGAG
AAGTTTAAAGAGTTGGCGCAAGCGTATGAGGTTCTGAGTGACCCCCAGAA
GCGTGAGATATATGATCAATACGGCGAGGATGCGCTTAAAGAGGGAATGG
GTGGTGGTGGTGGTGCCCATGACCCATTCGACATATTCCAATCCTTCTTC
CGTGGCAGCCCATTTGGGGGTGGGAGCAGCAGAGGAGAGAAGGCGAAGGA
GGGGAGAGGACGTACTCCATCCCCTCGAGGGTTCGGTGGAGGATCTGTAC
AAGGGGACATCTAAGAAGCTCTCGCTCTCCCGCAATGGAGTCTGCACCAA
GTGCAGAGGGAAGGGGTCTAAGTCAGGGGCATCGATGAAATGTTCTGGGT
GCCAGGGATCTGGAATGACAGTTTCAA