CN185479

Overview
NameCN185479
Unique NameCN185479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185479_ssr300 microsatellite CN185479_ssr300:300..314. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig760 contig Csv1_Contig760:78..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_NITEC (Chaperone protein dnaJ OS=Nitrosomonas eutropha (strain C91) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDK-GGD---PEKFKELAQAYEVLSDPQKREIYDQYGEDAL 287
            YYE+LGV ++A + +LKK YR+ A++ HPD+  GD    E+FKE+ +AYEVLSD  KR  YDQ+G   L
Sbjct:    6 YYEVLGVGRDADESELKKVYRKLAMKYHPDRNAGDAKAEERFKEIKEAYEVLSDSNKRAAYDQFGHAGL 74          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_MICAN (Chaperone protein dnaJ OS=Microcystis aeruginosa (strain NIES-843) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKGGDP---EKFKELAQAYEVLSDPQKREIYDQYGE 278
            YYEILGVS++A ++D+K+AYR  A + HPD   +P   E FKE+ +AYE+LS+P+ R  YD++GE
Sbjct:    5 YYEILGVSRDAGKEDIKRAYRRLARKYHPDVNKEPGAEEHFKEINRAYEILSEPETRNRYDRFGE 69          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_LEGPN (Chaperone protein dnaJ OS=Legionella pneumophila GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GD---PEKFKELAQAYEVLSDPQKREIYDQYG 275
            YYE+L VS+NAS  ++KKAYR  A++ HPD+  GD    EKFKE+ +AY +LSD QKR  YDQ+G
Sbjct:    6 YYELLEVSRNASDAEIKKAYRRLAMKYHPDRNPGDTSAEEKFKEIQKAYNILSDKQKRAAYDQFG 70          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_LEGPL (Chaperone protein dnaJ OS=Legionella pneumophila (strain Lens) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GD---PEKFKELAQAYEVLSDPQKREIYDQYG 275
            YYE+L VS+NAS  ++KKAYR  A++ HPD+  GD    EKFKE+ +AY +LSD QKR  YDQ+G
Sbjct:    6 YYELLEVSRNASDAEIKKAYRRLAMKYHPDRNPGDTSAEEKFKEIQKAYNILSDKQKRAAYDQFG 70          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_LEGPH (Chaperone protein dnaJ OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GD---PEKFKELAQAYEVLSDPQKREIYDQYG 275
            YYE+L VS+NAS  ++KKAYR  A++ HPD+  GD    EKFKE+ +AY +LSD QKR  YDQ+G
Sbjct:    6 YYELLEVSRNASDAEIKKAYRRLAMKYHPDRNPGDTSAEEKFKEIQKAYNILSDKQKRAAYDQFG 70          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_LEGPC (Chaperone protein dnaJ OS=Legionella pneumophila (strain Corby) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GD---PEKFKELAQAYEVLSDPQKREIYDQYG 275
            YYE+L VS+NAS  ++KKAYR  A++ HPD+  GD    EKFKE+ +AY +LSD QKR  YDQ+G
Sbjct:    6 YYELLEVSRNASDAEIKKAYRRLAMKYHPDRNPGDTSAEEKFKEIQKAYNILSDKQKRAAYDQFG 70          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_LEGPA (Chaperone protein dnaJ OS=Legionella pneumophila (strain Paris) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GD---PEKFKELAQAYEVLSDPQKREIYDQYG 275
            YYE+L VS+NAS  ++KKAYR  A++ HPD+  GD    EKFKE+ +AY +LSD QKR  YDQ+G
Sbjct:    6 YYELLEVSRNASDAEIKKAYRRLAMKYHPDRNPGDTSAEEKFKEIQKAYNILSDKQKRAAYDQFG 70          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_BORBU (Chaperone protein dnaJ OS=Borrelia burgdorferi GN=dnaJ PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKGGDPEK----FKELAQAYEVLSDPQKREIYDQYGEDALK 290
            YYEILG+SK AS+D++KKAYR+ AI+ HPD+    E+    FKE  QAYE+L D  K+  YD++G  A +
Sbjct:    5 YYEILGLSKGASKDEIKKAYRKIAIKYHPDRNQGNEEAASIFKEATQAYEILIDDNKKAKYDRFGHSAFE 74          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_BARHE (Chaperone protein dnaJ OS=Bartonella henselae GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALK 290
            YYEILGV++      LK A+R+ A+Q HPD+  GD E   KFKE+ +AYEVL DPQKR  YD++G  A +
Sbjct:    5 YYEILGVTRECDDKKLKSAFRKLAMQYHPDRNAGDKEAERKFKEIGEAYEVLKDPQKRAAYDRFGHAAFE 74          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_AGRVS (Chaperone protein dnaJ OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            +YE LGVSK A + +LK A+R+ A++ HPDK  GD E   KFKE+ +AYE L DPQKR  YD++G  A ++
Sbjct:    6 FYETLGVSKTADEKELKSAFRKLAMKFHPDKNPGDAESERKFKEINEAYETLKDPQKRAAYDRFGHAAFEQ 76          
The following BLAST results are available for this feature:
BLAST of CN185479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_NITEC4.645e-1352.17Chaperone protein dnaJ OS=Nitrosomonas eutropha (s... [more]
DNAJ_MICAN4.645e-1352.31Chaperone protein dnaJ OS=Microcystis aeruginosa (... [more]
DNAJ_LEGPN4.645e-1356.92Chaperone protein dnaJ OS=Legionella pneumophila G... [more]
DNAJ_LEGPL4.645e-1356.92Chaperone protein dnaJ OS=Legionella pneumophila (... [more]
DNAJ_LEGPH4.645e-1356.92Chaperone protein dnaJ OS=Legionella pneumophila s... [more]
DNAJ_LEGPC4.645e-1356.92Chaperone protein dnaJ OS=Legionella pneumophila (... [more]
DNAJ_LEGPA4.645e-1356.92Chaperone protein dnaJ OS=Legionella pneumophila (... [more]
DNAJ_BORBU4.645e-1351.43Chaperone protein dnaJ OS=Borrelia burgdorferi GN=... [more]
DNAJ_BARHE4.645e-1352.86Chaperone protein dnaJ OS=Bartonella henselae GN=d... [more]
DNAJ_AGRVS4.645e-1352.11Chaperone protein dnaJ OS=Agrobacterium vitis (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185479 ID=CN185479; Name=CN185479; organism=Citrus sinensis; type=EST; length=577bp
AGTGCCGTCTCGCGTCTACTCTGAAGATCTGAAATTTTTCTAGATACAAG
AAGATGTTCGGAAGAGCGCCCAAGAAAAGCGATAACCCAAAGTACTATGA
GATTCTCGGAGTCTCGAAAAACGCTTCGCAAGATGATCTGAAGAAGGCTT
ATAGGGAAGCCGCCATCCAAAACCATCCTGACAAGGGCGGTGATCCTGAG
AAGTTTAAAGAGTTGGCGCAAGCGTATGAGGTTCTGAGTGACCCCCAGAA
GCGTGAGATATATGATCAATACGGCGAGGATGCGCTTAAAGAGGGAATGG
GTGGTGGTGGTGGTGCCCATGACCCATTCGACATATTCCAATCCTTCTTC
CGTGGCAGCCCATTTGGGGGTGGGAGCAGCAGAGGAGAGAAGGCGAAGGA
GGGGAGAGGACGTACTCCATCCCCTCGAGGGTTCGGTGGAGGATCTGTAC
AAGGGGACATCTAAGAAGCTCTCGCTCTCCCGCAATGGAGTCTGCACCAA
GTGCAGAGGGAAGGGGTCTAAGTCAGGGGCATCGATGAAATGTTCTGGGT
GCCAGGGATCTGGAATGACAGTTTCAA
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