CN185479

Overview
NameCN185479
Unique NameCN185479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185479_ssr300 microsatellite CN185479_ssr300:300..314. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig760 contig Csv1_Contig760:78..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_ECO27 (Chaperone protein dnaJ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.806e-19
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEILGVSK A + ++KKAY+  A++ HPD+  GD E   KFKE+ +AYEVL+D QKR  YDQYG  A ++
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 76          

HSP 2 Score: 35.4242 bits (80), Expect = 1.806e-19
Identity = 16/53 (30.19%), Postives = 28/53 (52.83%), Query Frame = 1
Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGAS-MKCSGCQGSG 564
            D+ + +E ++E+  +G +K++ +     C  C G G+K G     C  C GSG
Sbjct:  116 DLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSG 168          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_ECO24 (Chaperone protein dnaJ OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.806e-19
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEILGVSK A + ++KKAY+  A++ HPD+  GD E   KFKE+ +AYEVL+D QKR  YDQYG  A ++
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 76          

HSP 2 Score: 35.4242 bits (80), Expect = 1.806e-19
Identity = 16/53 (30.19%), Postives = 28/53 (52.83%), Query Frame = 1
Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGAS-MKCSGCQGSG 564
            D+ + +E ++E+  +G +K++ +     C  C G G+K G     C  C GSG
Sbjct:  116 DLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSG 168          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_KLEP7 (Chaperone protein dnaJ OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.348e-19
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEILGVSK A + ++KKAY+  A++ HPD+  GD E   KFKE+ +AYE+L+D QKR  YDQYG  A ++
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEILTDAQKRAAYDQYGHAAFEQ 76          

HSP 2 Score: 35.4242 bits (80), Expect = 2.348e-19
Identity = 15/53 (28.30%), Postives = 30/53 (56.60%), Query Frame = 1
Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGAS-MKCSGCQGSG 564
            D+ + +E ++E+  +G +K++ +     C  C G G+K+G+    C  C G+G
Sbjct:  117 DLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGSKPQTCPTCHGAG 169          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_KLEP3 (Chaperone protein dnaJ OS=Klebsiella pneumoniae (strain 342) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.348e-19
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEILGVSK A + ++KKAY+  A++ HPD+  GD E   KFKE+ +AYE+L+D QKR  YDQYG  A ++
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEILTDAQKRAAYDQYGHAAFEQ 76          

HSP 2 Score: 35.4242 bits (80), Expect = 2.348e-19
Identity = 15/53 (28.30%), Postives = 30/53 (56.60%), Query Frame = 1
Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGAS-MKCSGCQGSG 564
            D+ + +E ++E+  +G +K++ +     C  C G G+K+G+    C  C G+G
Sbjct:  117 DLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGSKPQTCPTCHGAG 169          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_SALPK (Chaperone protein dnaJ OS=Salmonella paratyphi A (strain AKU_12601) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.349e-19
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEILGVSK A + ++KKAY+  A++ HPD+  GD E   KFKE+ +AYEVL+D QKR  YDQYG  A ++
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQ 76          

HSP 2 Score: 35.039 bits (79), Expect = 2.349e-19
Identity = 15/53 (28.30%), Postives = 29/53 (54.72%), Query Frame = 1
Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGAS-MKCSGCQGSG 564
            D+ + ++ ++E+  +G +K++ +     C  C G G+K+G     C  C GSG
Sbjct:  115 DLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGSG 167          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_SALPA (Chaperone protein dnaJ OS=Salmonella paratyphi A GN=dnaJ PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 2.349e-19
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKG-GDPE---KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEILGVSK A + ++KKAY+  A++ HPD+  GD E   KFKE+ +AYEVL+D QKR  YDQYG  A ++
Sbjct:    6 YYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQ 76          

HSP 2 Score: 35.039 bits (79), Expect = 2.349e-19
Identity = 15/53 (28.30%), Postives = 29/53 (54.72%), Query Frame = 1
Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGAS-MKCSGCQGSG 564
            D+ + ++ ++E+  +G +K++ +     C  C G G+K+G     C  C GSG
Sbjct:  115 DLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGSG 167          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_FRAP2 (Chaperone protein dnaJ OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.349e-19
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKGGDPE----KFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YYEIL VSK AS  ++K+AYR+ A++ HPD+  D +    KFKE+++AYE+LSD  KR  YDQ+G   + +
Sbjct:    6 YYEILNVSKTASGVEIKRAYRKLAMKYHPDRNPDDKEAEIKFKEISEAYEILSDDGKRSRYDQFGHAGVNQ 76          

HSP 2 Score: 42.3578 bits (98), Expect = 2.349e-19
Identity = 18/52 (34.62%), Postives = 28/52 (53.85%), Query Frame = 1
Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGASMKCSGCQGSG 564
            D+ + +E S+E+ + G  K++++ R   C  C G GSKS     C  C G G
Sbjct:  115 DLEYTIEISLEEAFFGVEKEINIPRMESCDSCDGTGSKSKTKTTCHACHGQG 166          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNAJ_PASMU (Chaperone protein dnaJ OS=Pasteurella multocida GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.349e-19
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKGGD----PEKFKELAQAYEVLSDPQKREIYDQYGEDALKE 293
            YY++LGV + A + ++K+AY++ A++ HPD+        EKFKE+ +AYEVLSD QKR  YDQYG  A ++
Sbjct:    6 YYDVLGVERGADEKEIKRAYKKLAMKYHPDRTQGNKELEEKFKEIQEAYEVLSDKQKRANYDQYGHAAFEQ 76          

HSP 2 Score: 41.5874 bits (96), Expect = 2.349e-19
Identity = 18/53 (33.96%), Postives = 33/53 (62.26%), Query Frame = 1
Query:  409 DVLHPLEGSVEDLYKGTSKKLSLSRNGVCTKCRGKGSKSGASMK-CSGCQGSG 564
            D+ + LE S+E+  +GT+K + ++    C  C G G++ G+ ++ CS C G+G
Sbjct:  115 DLRYDLEISLEEAVRGTTKDIQINTLAHCDSCDGSGAEKGSKVETCSTCHGAG 167          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNJB4_PONAB (DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKGGDP---EKFKELAQAYEVLSDPQKREIYDQYGEDALK 290
            YY ILG+ K AS +D+KKAYR+ A++ HPDK   P   EKFKE+A+AYEVLSDP+KREIYDQ+GE+ LK
Sbjct:    5 YYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLK 73          
BLAST of CN185479 vs. ExPASy Swiss-Prot
Match: DNJB4_MOUSE (DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 3
Query:   93 YYEILGVSKNASQDDLKKAYREAAIQNHPDKGGDP---EKFKELAQAYEVLSDPQKREIYDQYGEDALK 290
            YY ILG+ K A+ +D+KKAYR+ A++ HPDK   P   EKFKE+A+AYEVLSDP+KREIYDQ+GE+ LK
Sbjct:    5 YYHILGIDKGATDEDVKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLK 73          
The following BLAST results are available for this feature:
BLAST of CN185479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_ECO271.806e-1956.34Chaperone protein dnaJ OS=Escherichia coli O127:H6... [more]
DNAJ_ECO241.806e-1956.34Chaperone protein dnaJ OS=Escherichia coli O139:H2... [more]
DNAJ_KLEP72.348e-1954.93Chaperone protein dnaJ OS=Klebsiella pneumoniae su... [more]
DNAJ_KLEP32.348e-1954.93Chaperone protein dnaJ OS=Klebsiella pneumoniae (s... [more]
DNAJ_SALPK2.349e-1956.34Chaperone protein dnaJ OS=Salmonella paratyphi A (... [more]
DNAJ_SALPA2.349e-1956.34Chaperone protein dnaJ OS=Salmonella paratyphi A G... [more]
DNAJ_FRAP22.349e-1949.30Chaperone protein dnaJ OS=Francisella philomiragia... [more]
DNAJ_PASMU2.349e-1947.89Chaperone protein dnaJ OS=Pasteurella multocida GN... [more]
DNJB4_PONAB3.321e-1965.22DnaJ homolog subfamily B member 4 OS=Pongo abelii ... [more]
DNJB4_MOUSE3.321e-1963.77DnaJ homolog subfamily B member 4 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185479 ID=CN185479; Name=CN185479; organism=Citrus sinensis; type=EST; length=577bp
AGTGCCGTCTCGCGTCTACTCTGAAGATCTGAAATTTTTCTAGATACAAG
AAGATGTTCGGAAGAGCGCCCAAGAAAAGCGATAACCCAAAGTACTATGA
GATTCTCGGAGTCTCGAAAAACGCTTCGCAAGATGATCTGAAGAAGGCTT
ATAGGGAAGCCGCCATCCAAAACCATCCTGACAAGGGCGGTGATCCTGAG
AAGTTTAAAGAGTTGGCGCAAGCGTATGAGGTTCTGAGTGACCCCCAGAA
GCGTGAGATATATGATCAATACGGCGAGGATGCGCTTAAAGAGGGAATGG
GTGGTGGTGGTGGTGCCCATGACCCATTCGACATATTCCAATCCTTCTTC
CGTGGCAGCCCATTTGGGGGTGGGAGCAGCAGAGGAGAGAAGGCGAAGGA
GGGGAGAGGACGTACTCCATCCCCTCGAGGGTTCGGTGGAGGATCTGTAC
AAGGGGACATCTAAGAAGCTCTCGCTCTCCCGCAATGGAGTCTGCACCAA
GTGCAGAGGGAAGGGGTCTAAGTCAGGGGCATCGATGAAATGTTCTGGGT
GCCAGGGATCTGGAATGACAGTTTCAA
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