CN185478

Overview
NameCN185478
Unique NameCN185478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJA1_DICDI (DnaJ homolog subfamily A member 1 homolog OS=Dictyostelium discoideum GN=dnaja1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 41/133 (30.83%), Postives = 75/133 (56.39%), Query Frame = -2
Query:  338 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVN 736
            GD++  +++K +  FKR GD+L     L L +++ G QF+I  LD R+L +  + G+++K    + I +EGMP+ +    +GKL I F +++P +L+ D  + L  +LP   +  ++     +C+   L  VN
Sbjct:  275 GDVIITIREKPNVNFKRNGDNLIYTKRLKLLDSIAGSQFIINTLDQRKLWVNHEKGDIIKQGDMRYIENEGMPI-KGTSRKGKLIIAFDIEYPSNLTNDDIEKLSKILPKAATPSVSK---SDCKSVGLSKVN 403          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJB4_PONAB (DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = -2
Query:  410 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVLP 742
            +  DIVF+++ K+HPKFKR G ++     +SL EALCG    +  LDGR   I     ++VKP   + I   G+P  + P  RG L I F V FP+++S    ++L   LP
Sbjct:  227 IPADIVFIIKDKDHPKFKRDGSNIIYTAKISLREALCGCSINVPTLDGRN--IPMSVNDIVKPGMRRRIIGYGLPFPKNPDQRGDLLIEFEVSFPDTISSSSKEVLRKHLP 335          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJB4_HUMAN (DnaJ homolog subfamily B member 4 OS=Homo sapiens GN=DNAJB4 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = -2
Query:  410 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVLP 742
            +  DIVF+++ K+HPKFKR G ++     +SL EALCG    +  LDGR   I     ++VKP   + I   G+P  + P  RG L I F V FP+++S    ++L   LP
Sbjct:  227 IPADIVFIIKDKDHPKFKRDGSNIIYTAKISLREALCGCSINVPTLDGRN--IPMSVNDIVKPGMRRRIIGYGLPFPKNPDQRGDLLIEFEVSFPDTISSSSKEVLRKHLP 335          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJB4_BOVIN (DnaJ homolog subfamily B member 4 OS=Bos taurus GN=DNAJB4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.657e-15
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = -2
Query:  410 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVLP 742
            +  DIVFV++ K+HPKFKR G ++     +SL EALCG    +  +DGR   I     ++VKP   + I   G+P  + P  RG L I F V FP+++S    ++L   LP
Sbjct:  227 IPADIVFVIKDKDHPKFKRDGSNIIYTAKISLREALCGCSINVPTMDGR--TIPMTINDIVKPGMRRRIIGYGLPFPKNPDQRGDLLIEFEVSFPDTISSSSKEVLRKHLP 335          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJB4_MOUSE (DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = -2
Query:  410 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVLP 742
            +  DIVFV++ KEHPKFKR G ++     +SL EALCG    +  +DGR L +     ++VKP   + +   G+P  + P  RG L I F V FP+ +S    ++L   LP
Sbjct:  227 IPADIVFVIKDKEHPKFKRDGSNIVYTAKISLREALCGCSLNVPTMDGRNLPMSVT--DIVKPGMRRRVIGYGLPFPKNPDQRGDLLIEFDVSFPDVISAASKEILRKHLP 335          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJB5_MOUSE (DnaJ homolog subfamily B member 5 OS=Mus musculus GN=Dnajb5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = -2
Query:  410 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVLP 742
            +  DIVFVL+ K H  F+R G ++     +SL EALCG    I  +DGR  +I     +V+KP   K +  EG+P  + P  RG L + F V FP+ L+P   ++L+  LP
Sbjct:  238 IPADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCGCTVNIPTIDGR--VIPLPCNDVIKPGTVKRLRGEGLPFPKVPTQRGDLIVEFKVRFPDRLTPQTRQILKQHLP 346          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJB5_HUMAN (DnaJ homolog subfamily B member 5 OS=Homo sapiens GN=DNAJB5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = -2
Query:  410 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVLP 742
            +  DIVFVL+ K H  F+R G ++     +SL EALCG    I  +DGR  +I     +V+KP   K +  EG+P  + P  RG L + F V FP+ L+P   ++L+  LP
Sbjct:  238 IPADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCGCTVNIPTIDGR--VIPLPCNDVIKPGTVKRLRGEGLPFPKVPTQRGDLIVEFKVRFPDRLTPQTRQILKQHLP 346          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJB5_BOVIN (DnaJ homolog subfamily B member 5 OS=Bos taurus GN=DNAJB5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = -2
Query:  410 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVLP 742
            +  DIVFVL+ K H  F+R G ++     +SL EALCG    I  +DGR  +I     +V+KP   K +  EG+P  + P  RG L + F V FP+ L+P   ++L+  LP
Sbjct:  238 IPADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCGCTVNIPTIDGR--VIPLPCNDVIKPGTVKRLRGEGLPFPKVPTQRGDLIVEFKVRFPDRLTPQTRQILKQHLP 346          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJB1_MOUSE (DnaJ homolog subfamily B member 1 OS=Mus musculus GN=Dnajb1 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = -2
Query:  410 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVLP 742
            +  DIVFVL+ K H  FKR G D+     +SL EALCG    +  LDGR + +  +  +V++P   + +  EG+P+ + P  RG L I F V FPE +      +LE VLP
Sbjct:  231 IPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLVIEFEVIFPERIPVSSRTILEQVLP 339          
BLAST of CN185478 vs. ExPASy Swiss-Prot
Match: DNJB1_HUMAN (DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = -2
Query:  410 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVLP 742
            +  DIVFVL+ K H  FKR G D+     +SL EALCG    +  LDGR + +  +  +V++P   + +  EG+P+ + P  RG L I F V FPE +      +LE VLP
Sbjct:  231 IPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 339          
The following BLAST results are available for this feature:
BLAST of CN185478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
DNJA1_DICDI9.625e-1630.83DnaJ homolog subfamily A member 1 homolog OS=Dicty... [more]
DNJB4_PONAB1.257e-1538.74DnaJ homolog subfamily B member 4 OS=Pongo abelii ... [more]
DNJB4_HUMAN1.257e-1538.74DnaJ homolog subfamily B member 4 OS=Homo sapiens ... [more]
DNJB4_BOVIN3.657e-1538.74DnaJ homolog subfamily B member 4 OS=Bos taurus GN... [more]
DNJB4_MOUSE6.239e-1538.74DnaJ homolog subfamily B member 4 OS=Mus musculus ... [more]
DNJB5_MOUSE2.371e-1438.74DnaJ homolog subfamily B member 5 OS=Mus musculus ... [more]
DNJB5_HUMAN2.371e-1438.74DnaJ homolog subfamily B member 5 OS=Homo sapiens ... [more]
DNJB5_BOVIN2.371e-1438.74DnaJ homolog subfamily B member 5 OS=Bos taurus GN... [more]
DNJB1_MOUSE2.371e-1439.64DnaJ homolog subfamily B member 1 OS=Mus musculus ... [more]
DNJB1_HUMAN2.371e-1439.64DnaJ homolog subfamily B member 1 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185478 ID=CN185478; Name=CN185478; organism=Citrus sinensis; type=EST; length=743bp
CCTTTTTTTTAATATTGTAAACACTAAAAATATTAATTATGAGCATTGAG
TCTGCACGTTGTTAACGCTAGAATTCCATTACATAGTCAGTTATCAGAAA
CATATAAGAATAAAGACAGACAAACCAAAACTAGAACCTCTAAAGCCTAT
AACAGAAAATAAATATGTTGAGAATCTTTTTCTCCCAAACAATGAAAATA
CTAAATCAGGCCACCCCTTTTCTTCTACATCATCACTGCTGAGCACACTG
CACTCTCTGGGCACCACCTTGCATATCGTCATCTTCATCGTATGCCTCCT
GAGCTGCTTGTTGCTTCCTTCGCATTTCCTCCTCAATGTTCACATCATGC
AGGGTTGTTTCTTCACACTCATCCAGTTCCATATCGGTGAGCTGGACTGA
GGTCCTTGGAGGTAGTACGGTCTCCAGCATCTTGCACTGGTCTGGGCTCA
GTGACTCAGGGAAGTCAACACTGAAATGAATGTACAGTTTGCCCCTCATA
AATGGCCTCTGATACATAGGCATTCCTTCATCATTTATGGCCTTGAATTG
GTCCGGCTTGACTACTTCCCCAGGCTGGGATTTGATGAGGAGTTGCCGGC
CATCCAAATGAGTTATTACAAATTGAAAGCCACAGAGAGCTTCTGTCAGT
GACAGGGTGTGCTCAACAAATAGGTCATCACCCTTTCGCTTAAATTTCGG
GTGCTCTTTCTGTTGTAGAACAAATACAATGTCACCTGTGACA
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