CN185474 | Citrus Genome Database

Overview


Name	CN185474
Unique Name	CN185474
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	661

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 4.242e-38
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = -1

Query:  278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568
            + +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   56 QCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151

HSP 2 Score: 38.891 bits (89), Expect = 4.242e-38
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = -3

Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETA AI+ + + KA +YL+DV   KQ
Sbjct:   26 FKNTRETAQAIKGMHIRKATKYLKDVTLKKQ 56

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_BOVIN (60S ribosomal protein L17 OS=Bos taurus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 4.242e-38
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = -1

Query:  278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568
            + +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   56 QCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151

HSP 2 Score: 38.891 bits (89), Expect = 4.242e-38
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = -3

Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETA AI+ + + KA +YL+DV   KQ
Sbjct:   26 FKNTRETAQAIKGMHIRKATKYLKDVTLKKQ 56

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_ARGMO (60S ribosomal protein L17 OS=Argas monolakensis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.380e-38
Identity = 68/95 (71.58%), Postives = 76/95 (80.00%), Query Frame = -1

Query:  278 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 562
            +PF RF GGVGR AQAK      QGRWP KSA+F+  LL+NAESNA+ KGLDVD L I HIQVN+A K RRRTYRAHGRINPYMSSPCH+E+ LS
Sbjct:   58 VPFRRFNGGVGRKAQAKAWGCT-QGRWPKKSAEFLWQLLRNAESNADYKGLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHVEVILS 151

HSP 2 Score: 41.9726 bits (97), Expect = 9.380e-38
Identity = 18/31 (58.06%), Postives = 27/31 (87.10%), Query Frame = -3

Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETA AI+++ L +A+RYL++V+A K+
Sbjct:   26 FKNTRETAQAIKRMSLRRAQRYLKNVIAKKE 56

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_LONON (60S ribosomal protein L17 OS=Lonomia obliqua GN=RpL17 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.222e-37
Identity = 74/115 (64.35%), Postives = 81/115 (70.43%), Query Frame = -1

Query:  218 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSK 562
            IPF RF GGVGR AQAK +    QGRWP KSA+F L LL+NAESNA+ KGLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ LS           T  A +K K
Sbjct:   58 IPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFPLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVALSEREDAVSRAAPTDDAPAKKK 171

HSP 2 Score: 40.0466 bits (92), Expect = 1.222e-37
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = -3

Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNT ETA AIRK+PL +A RYL++V   K+
Sbjct:   26 FKNTYETAMAIRKMPLRRAVRYLKNVTEKKE 56

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_IXOSC (60S ribosomal protein L17 OS=Ixodes scapularis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.222e-37
Identity = 69/95 (72.63%), Postives = 76/95 (80.00%), Query Frame = -1

Query:  278 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 562
            +PF RF GGVGR AQAK      QGRWP KSA+F+  LL+NAESNA+ KGLDVD L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ LS
Sbjct:   58 VPFRRFNGGVGRKAQAK-AFGCTQGRWPKKSAEFLWQLLRNAESNADYKGLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHIEVILS 151

HSP 2 Score: 40.817 bits (94), Expect = 1.222e-37
Identity = 18/31 (58.06%), Postives = 26/31 (83.87%), Query Frame = -3

Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETA AI+ + L +A+RYL++V+A K+
Sbjct:   26 FKNTRETAQAIKHMALRRAQRYLKNVIAKKE 56

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_ANOGA (60S ribosomal protein L17 OS=Anopheles gambiae GN=RpL17 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.701e-37
Identity = 68/95 (71.58%), Postives = 78/95 (82.11%), Query Frame = -1

Query:  278 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 562
            +PF RF GGVGR AQAK+      GRWP KSA+F+L LLKNAE+NA+ KGLDVD L I+HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL+L+
Sbjct:   58 VPFRRFNGGVGRCAQAKH-WGTSVGRWPKKSAEFLLQLLKNAEANADYKGLDVDRLVINHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIELSLT 151

HSP 2 Score: 40.4318 bits (93), Expect = 2.701e-37
Identity = 17/31 (54.84%), Postives = 27/31 (87.10%), Query Frame = -3

Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETA AI+++PL +A+R+L++V+  K+
Sbjct:   26 FKNTRETALAIKRMPLRRAQRFLKNVIEKKE 56

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_BOMMO (60S ribosomal protein L17 OS=Bombyx mori GN=RpL17 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.519e-37
Identity = 73/115 (63.48%), Postives = 81/115 (70.43%), Query Frame = -1

Query:  218 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSK 562
            IPF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ LS           T  A +K K
Sbjct:   58 IPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPAKKK 171

HSP 2 Score: 40.817 bits (94), Expect = 3.519e-37
Identity = 19/31 (61.29%), Postives = 25/31 (80.65%), Query Frame = -3

Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNT ETA AIRK+PL +A RYL++V+  K+
Sbjct:   26 FKNTYETAMAIRKMPLRRAVRYLKNVIEKKE 56

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_AGRLI (60S ribosomal protein L17 OS=Agriotes lineatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.519e-37
Identity = 66/95 (69.47%), Postives = 76/95 (80.00%), Query Frame = -1

Query:  278 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 562
            +PF RF GGVGR AQAK +    QGRWP KSA+F+L +L+NAESNA+  GLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   58 VPFRRFNGGVGRCAQAK-QWGTTQGRWPKKSAEFLLQMLRNAESNADYSGLDVDRLVIEHIQVNRAACLRRRTYRAHGRINPYMSSPCHIEMWLT 151

HSP 2 Score: 43.1282 bits (100), Expect = 3.519e-37
Identity = 19/31 (61.29%), Postives = 26/31 (83.87%), Query Frame = -3

Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNT ETA+AIRK+PL +A  YL++V+ HK+
Sbjct:   26 FKNTCETANAIRKMPLKRAVAYLKNVIGHKE 56

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_BIPLU (60S ribosomal protein L17 OS=Biphyllus lunatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.976e-37
Identity = 67/95 (70.53%), Postives = 76/95 (80.00%), Query Frame = -1

Query:  278 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 562
            +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+  GLDVD L + HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL L+
Sbjct:   58 VPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADYSGLDVDRLVVQHIQVNRAACLRRRTYRAHGRINPYMSSPCHIELWLT 151

HSP 2 Score: 40.817 bits (94), Expect = 5.976e-37
Identity = 19/31 (61.29%), Postives = 25/31 (80.65%), Query Frame = -3

Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNT ETA+AIRK+PL +A  YL++V A K+
Sbjct:   26 FKNTCETANAIRKMPLKRAVAYLKNVTAQKE 56

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_CAEEL (60S ribosomal protein L17 OS=Caenorhabditis elegans GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.013e-36
Identity = 69/95 (72.63%), Postives = 76/95 (80.00%), Query Frame = -1

Query:  278 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 562
            +PF RF GG+GR AQ K  +   QGRWPVKSA F+LDLLKNAESNAE KGLDVD L I HI V +A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   60 VPFRRFHGGIGRAAQTKQWNTT-QGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 153

HSP 2 Score: 35.039 bits (79), Expect = 1.013e-36
Identity = 15/31 (48.39%), Postives = 21/31 (67.74%), Query Frame = -3

Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNT E A A+R +PL +A+ +L  V  HK+
Sbjct:   28 FKNTHEAAMALRGMPLRRAQAFLNHVKEHKE 58

The following BLAST results are available for this feature:

BLAST of CN185474 vs. ExPASy Swiss-Prot

BLAST of CN185474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50


Match Name	E-value	Identity	Description
RL17_MOUSE	4.242e-38	71.13	60S ribosomal protein L17 OS=Mus musculus GN=Rpl17...	[more]
RL17_BOVIN	4.242e-38	71.13	60S ribosomal protein L17 OS=Bos taurus GN=RPL17 P...	[more]
RL17_ARGMO	9.380e-38	71.58	60S ribosomal protein L17 OS=Argas monolakensis GN...	[more]
RL17_LONON	1.222e-37	64.35	60S ribosomal protein L17 OS=Lonomia obliqua GN=Rp...	[more]
RL17_IXOSC	1.222e-37	72.63	60S ribosomal protein L17 OS=Ixodes scapularis GN=...	[more]
RL17_ANOGA	2.701e-37	71.58	60S ribosomal protein L17 OS=Anopheles gambiae GN=...	[more]
RL17_BOMMO	3.519e-37	63.48	60S ribosomal protein L17 OS=Bombyx mori GN=RpL17 ...	[more]
RL17_AGRLI	3.519e-37	69.47	60S ribosomal protein L17 OS=Agriotes lineatus GN=...	[more]
RL17_BIPLU	5.976e-37	70.53	60S ribosomal protein L17 OS=Biphyllus lunatus GN=...	[more]
RL17_CAEEL	1.013e-36	72.63	60S ribosomal protein L17 OS=Caenorhabditis elegan...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS05_0001G08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN185474 ID=CN185474; Name=CN185474; organism=Citrus sinensis; type=EST; length=661bp
AAAAGTCTTTAATTTTCATAAAGCTCCAACAGTATGACTGAGGATTCTAA
CAAAACAGTAAACTGGACGTAATATGAAATAAACAAAATATGATGTCTGA
TTTGACTAAATAACATCTCAGTCACTATTAAAGGTAAAAAAACTCACTTC
ATCAAGAACACAAAATAGAAAATCAGGGCACTCTCCAATTGCTATGCTAA
ACCTCAGACAATTACTTCTTTGATTTGCTAGTTGCCAACTGGGTCTCAGG
CTCTTTCTTTACTGGCTCTTCCTTTTCAGATAAGGTCAACTCAATATGGC
AGGGAGAGGACATGTAAGGATTAATTCTTCCATGAGCACGGTATGTGCGG
CGCCTTTGCTTTTGTGCCTGGTTGACTTGGATGTGAGAAATGTAGAGTGC
ATCAACATCTAAACCTTTCACCTCAGCATTACTCTCAGCATTCTTGAGCA
AGTCAAGAATGAACTTTGCTGATTTGACAGGCCATCGTCCCTGTCCATTT
GGATGCCTATTCTTTGCCTGAGCAGTACGTCCAACACCACCGCAGAATCG
TGTGAAGGGAATGGCCCTGTTTATGGGCCATAACATCCTCCAAATACCTC
TTAGCCTTCGTCAAAGGCAATTTCCTGATGGCATGGGCAGTTTCTCTCGT
GTTCTTAAAAT