CN185474 | Citrus Genome Database

Overview


Name	CN185474
Unique Name	CN185474
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	661

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_DROYA (60S ribosomal protein L17 OS=Drosophila yakuba GN=RpL17 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.013e-36
Identity = 65/95 (68.42%), Postives = 77/95 (81.05%), Query Frame = -1

Query:  278 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 562
            +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAE+NA+ KGLD D L + HIQVN+AQ  RRRTYRAHGRINPYMSSPCH+E+ L+
Sbjct:   58 VPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILT 151

HSP 2 Score: 40.0466 bits (92), Expect = 1.013e-36
Identity = 17/31 (54.84%), Postives = 25/31 (80.65%), Query Frame = -3

Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNT ETA AI+++PL +A+RYL+ V+  K+
Sbjct:   26 FKNTHETAQAIKRMPLRRAQRYLKAVIDQKE 56

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_DROME (60S ribosomal protein L17 OS=Drosophila melanogaster GN=RpL17 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.013e-36
Identity = 65/95 (68.42%), Postives = 77/95 (81.05%), Query Frame = -1

Query:  278 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 562
            +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAE+NA+ KGLD D L + HIQVN+AQ  RRRTYRAHGRINPYMSSPCH+E+ L+
Sbjct:   58 VPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILT 151

HSP 2 Score: 40.0466 bits (92), Expect = 1.013e-36
Identity = 17/31 (54.84%), Postives = 25/31 (80.65%), Query Frame = -3

Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNT ETA AI+++PL +A+RYL+ V+  K+
Sbjct:   26 FKNTHETAQAIKRMPLRRAQRYLKAVIDQKE 56

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_PECGU (60S ribosomal protein L17 OS=Pectinaria gouldii GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.241e-36
Identity = 67/96 (69.79%), Postives = 78/96 (81.25%), Query Frame = -1

Query:  281 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 568
            + IPF R  GGVGR AQAKN +   QGRWP KS +F+L LLKNAESNAE++GLDVD+L ++H+ V+ A K RRRTYRAHGRINPYMSSPCHIEL L
Sbjct:   56 QCIPFRRHKGGVGRCAQAKNFNTT-QGRWPKKSCEFMLQLLKNAESNAELRGLDVDSLVVAHVSVDAAAKMRRRTYRAHGRINPYMSSPCHIELCL 150

HSP 2 Score: 36.1946 bits (82), Expect = 2.241e-36
Identity = 16/31 (51.61%), Postives = 22/31 (70.97%), Query Frame = -3

Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            +KNT ET  AI+ + L KA+ YL +V+ HKQ
Sbjct:   26 YKNTSETGRAIKGMHLHKARSYLSNVVEHKQ 56

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_PHLPP (60S ribosomal protein L17 OS=Phlebotomus papatasi GN=RpL17 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.919e-36
Identity = 68/95 (71.58%), Postives = 77/95 (81.05%), Query Frame = -1

Query:  278 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 562
            +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ KGLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   58 VPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVILT 151

HSP 2 Score: 36.965 bits (84), Expect = 2.919e-36
Identity = 15/31 (48.39%), Postives = 25/31 (80.65%), Query Frame = -3

Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNT E A+AI+ +PL +A+R+L++V+  K+
Sbjct:   26 FKNTHEAANAIKHMPLRRAQRFLKNVVEKKE 56

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_MACHI (60S ribosomal protein L17 OS=Maconellicoccus hirsutus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.920e-36
Identity = 68/95 (71.58%), Postives = 79/95 (83.16%), Query Frame = -1

Query:  278 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 562
            +PF RF GGVGR AQAK +    QGRWP+KSA+F+L+LL+NAESNAE KGLD D L+I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   58 VPFRRFNGGVGRCAQAK-QWGTTQGRWPIKSAQFLLELLRNAESNAEFKGLDSDRLFIEHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVILT 151

HSP 2 Score: 34.2686 bits (77), Expect = 2.920e-36
Identity = 14/26 (53.85%), Postives = 22/26 (84.62%), Query Frame = -3

Query:  582 FKNTRETAHAIRKLPLTKAKRYLEDV 659
            FKNTRETA  I+++PL +A ++L++V
Sbjct:   26 FKNTRETAKTIKRMPLRRAIQFLKNV 51

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_DIACI (60S ribosomal protein L17 OS=Diaphorina citri GN=RpL17 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.153e-35
Identity = 67/95 (70.53%), Postives = 76/95 (80.00%), Query Frame = -1

Query:  278 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 562
            +PF R+ GGVGR AQAK +    QGRWP KSA F+L LLKNAESNA+ +GLD D L I HIQVN+A + RRRTYRAHGRINPYMSSPCHIE+ LS
Sbjct:   58 VPFRRYNGGVGRCAQAK-QWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGRINPYMSSPCHIEVILS 151

HSP 2 Score: 34.6538 bits (78), Expect = 3.153e-35
Identity = 15/26 (57.69%), Postives = 21/26 (80.77%), Query Frame = -3

Query:  582 FKNTRETAHAIRKLPLTKAKRYLEDV 659
            FKNTRETA  I K+PL +A ++L++V
Sbjct:   26 FKNTRETAKTISKMPLRRAIKFLKNV 51

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_NEUCR (60S ribosomal protein L17 OS=Neurospora crassa GN=rpl-17 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.005e-34
Identity = 63/96 (65.62%), Postives = 74/96 (77.08%), Query Frame = -1

Query:  278 AIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 565
            A+P  R+ GG GR AQ K +    + RWP KSA+F+L LLKNAE+NA+ KGLD   L + HIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL L+
Sbjct:   57 AVPMRRYAGGTGRAAQGK-QFGVSRARWPAKSAEFLLGLLKNAEANADAKGLDTGNLVVKHIQVNQAPKQRRRTYRAHGRINPYMSNPCHIELILT 151

HSP 2 Score: 35.4242 bits (80), Expect = 2.005e-34
Identity = 16/31 (51.61%), Postives = 23/31 (74.19%), Query Frame = -3

Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETA AI    L +A+++LE+V+  K+
Sbjct:   26 FKNTRETAQAINGWKLQRAQKFLENVLEKKE 56

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17A_YEAST (60S ribosomal protein L17-A OS=Saccharomyces cerevisiae GN=RPL17A PE=1 SV=4)

HSP 1 Score: 125.176 bits (313), Expect = 3.404e-34
Identity = 63/97 (64.95%), Postives = 71/97 (73.20%), Query Frame = -1

Query:  278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568
            RAIPF RF   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQVNQA KQRRRTYRAHGRIN Y SSP HIEL ++
Sbjct:   56 RAIPFRRFNSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVT 151

HSP 2 Score: 41.2022 bits (95), Expect = 3.404e-34
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = -3

Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETA AI    LTKA++YLE V+ H++
Sbjct:   26 FKNTRETAQAINGWELTKAQKYLEQVLDHQR 56

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_ASPFU (60S ribosomal protein L17 OS=Aspergillus fumigatus GN=rpl17 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.512e-34
Identity = 63/95 (66.32%), Postives = 76/95 (80.00%), Query Frame = -1

Query:  278 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 562
            +PF R+ G +GRTAQ K    + + RWPVKSA+F+LDLLKNAE+NA+ KGLD   L + HIQVNQA K RRRTYRAHGRINPYM++PCHIEL L+
Sbjct:   65 VPFRRYAGSIGRTAQGKQWGVS-KARWPVKSAQFLLDLLKNAEANADTKGLDTGNLIVKHIQVNQAPKGRRRTYRAHGRINPYMTNPCHIELILT 158

HSP 2 Score: 31.9574 bits (71), Expect = 7.512e-34
Identity = 15/26 (57.69%), Postives = 19/26 (73.08%), Query Frame = -3

Query:  582 FKNTRETAHAIRKLPLTKAKRYLEDV 659
            FKNTRETA AI  + L +A  +LE+V
Sbjct:   33 FKNTRETAQAINGMKLQRALAFLENV 58

[Close]

BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17B_YEAST (60S ribosomal protein L17-B OS=Saccharomyces cerevisiae GN=RPL17B PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 7.521e-34
Identity = 63/97 (64.95%), Postives = 71/97 (73.20%), Query Frame = -1

Query:  278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568
            RAIPF RF   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQVNQA KQRRRTYRAHGRIN Y SSP HIEL ++
Sbjct:   56 RAIPFRRFNSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVT 151

HSP 2 Score: 40.0466 bits (92), Expect = 7.521e-34
Identity = 18/31 (58.06%), Postives = 24/31 (77.42%), Query Frame = -3

Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETA AI    LTKA++YL+ V+ H++
Sbjct:   26 FKNTRETAQAINGWELTKAQKYLDQVLDHQR 56

The following BLAST results are available for this feature:

BLAST of CN185474 vs. ExPASy Swiss-Prot

BLAST of CN185474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50


Match Name	E-value	Identity	Description
RL17_DROYA	1.013e-36	68.42	60S ribosomal protein L17 OS=Drosophila yakuba GN=...	[more]
RL17_DROME	1.013e-36	68.42	60S ribosomal protein L17 OS=Drosophila melanogast...	[more]
RL17_PECGU	2.241e-36	69.79	60S ribosomal protein L17 OS=Pectinaria gouldii GN...	[more]
RL17_PHLPP	2.919e-36	71.58	60S ribosomal protein L17 OS=Phlebotomus papatasi ...	[more]
RL17_MACHI	2.920e-36	71.58	60S ribosomal protein L17 OS=Maconellicoccus hirsu...	[more]
RL17_DIACI	3.153e-35	70.53	60S ribosomal protein L17 OS=Diaphorina citri GN=R...	[more]
RL17_NEUCR	2.005e-34	65.63	60S ribosomal protein L17 OS=Neurospora crassa GN=...	[more]
RL17A_YEAST	3.404e-34	64.95	60S ribosomal protein L17-A OS=Saccharomyces cerev...	[more]
RL17_ASPFU	7.512e-34	66.32	60S ribosomal protein L17 OS=Aspergillus fumigatus...	[more]
RL17B_YEAST	7.521e-34	64.95	60S ribosomal protein L17-B OS=Saccharomyces cerev...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS05_0001G08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN185474 ID=CN185474; Name=CN185474; organism=Citrus sinensis; type=EST; length=661bp
AAAAGTCTTTAATTTTCATAAAGCTCCAACAGTATGACTGAGGATTCTAA
CAAAACAGTAAACTGGACGTAATATGAAATAAACAAAATATGATGTCTGA
TTTGACTAAATAACATCTCAGTCACTATTAAAGGTAAAAAAACTCACTTC
ATCAAGAACACAAAATAGAAAATCAGGGCACTCTCCAATTGCTATGCTAA
ACCTCAGACAATTACTTCTTTGATTTGCTAGTTGCCAACTGGGTCTCAGG
CTCTTTCTTTACTGGCTCTTCCTTTTCAGATAAGGTCAACTCAATATGGC
AGGGAGAGGACATGTAAGGATTAATTCTTCCATGAGCACGGTATGTGCGG
CGCCTTTGCTTTTGTGCCTGGTTGACTTGGATGTGAGAAATGTAGAGTGC
ATCAACATCTAAACCTTTCACCTCAGCATTACTCTCAGCATTCTTGAGCA
AGTCAAGAATGAACTTTGCTGATTTGACAGGCCATCGTCCCTGTCCATTT
GGATGCCTATTCTTTGCCTGAGCAGTACGTCCAACACCACCGCAGAATCG
TGTGAAGGGAATGGCCCTGTTTATGGGCCATAACATCCTCCAAATACCTC
TTAGCCTTCGTCAAAGGCAATTTCCTGATGGCATGGGCAGTTTCTCTCGT
GTTCTTAAAAT