CN185474

Overview
NameCN185474
Unique NameCN185474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_DICDI (60S ribosomal protein L17 OS=Dictyostelium discoideum GN=rpl17 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.276e-33
Identity = 62/95 (65.26%), Postives = 73/95 (76.84%), Query Frame = -1
Query:  278 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 562
            IPF RF GGVGRT QAK      QGRWP KS + IL LL+NAE+NAE KGL+V+ L I+H+QV +AQ+QRRRTYRAHGRINPYM SP  +E  L+
Sbjct:   60 IPFRRFKGGVGRTGQAKI-FGTSQGRWPKKSVEHILSLLQNAEANAEAKGLNVEKLKIAHVQVQRAQQQRRRTYRAHGRINPYMCSPSTVEFILT 153          

HSP 2 Score: 41.2022 bits (95), Expect = 1.276e-33
Identity = 18/31 (58.06%), Postives = 26/31 (83.87%), Query Frame = -3
Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRE+A AI+ + LT+AK YL +V+AH++
Sbjct:   28 FKNTRESAMAIKGMLLTRAKAYLNNVLAHRE 58          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_YARLI (60S ribosomal protein L17 OS=Yarrowia lipolytica GN=RPL17 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.672e-33
Identity = 70/118 (59.32%), Postives = 80/118 (67.80%), Query Frame = -1
Query:  215 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSKK 568
            RAIPF +  G +GRT Q K      + RWPVKS KF+ DLL+NA++NAE KGLD + L ISHIQVNQA KQRRRTYRAHGRIN Y SSP HIEL LS          ET LA   S++
Sbjct:   56 RAIPFRKHAGSIGRTGQGKEFGVT-KARWPVKSIKFVQDLLQNAQANAETKGLDKETLVISHIQVNQAPKQRRRTYRAHGRINAYQSSPSHIELILSEPAEEIAKAKETSLAHISSRQ 172          

HSP 2 Score: 31.9574 bits (71), Expect = 3.672e-33
Identity = 17/31 (54.84%), Postives = 19/31 (61.29%), Query Frame = -3
Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNT E A AIR   L KA  YL+ V  HK+
Sbjct:   26 FKNTYEVAGAIRGWNLQKALAYLDQVTDHKR 56          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17A_SCHPO (60S ribosomal protein L17-A OS=Schizosaccharomyces pombe GN=rpl17a PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.780e-33
Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = -1
Query:  278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568
            +A+PF RF GGVGRTAQ K      Q RWPVKS KF  DLLKNAE+NAE KGLD+D L I H+QVN A KQRRRTYRAHGR+  Y+SSP HIE+ ++
Sbjct:   56 QAVPFRRFNGGVGRTAQGKEFGVT-QARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVA 151          

HSP 2 Score: 31.5722 bits (70), Expect = 4.780e-33
Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = -3
Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKN+RE A  I  + L KA  +L++V  HKQ
Sbjct:   26 FKNSREVAFTINGMSLKKAFIFLDNVKEHKQ 56          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_DEBHA (60S ribosomal protein L17 OS=Debaryomyces hansenii GN=RPL17 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.056e-32
Identity = 63/97 (64.95%), Postives = 70/97 (72.16%), Query Frame = -1
Query:  278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568
            RAIPF RF   +GRT Q K      + RWP KS  FI DLL+N ++NAE KGLD   L +SHIQVNQA KQRRRTYRAHGRIN Y SSPCHIEL L+
Sbjct:   56 RAIPFRRFNSSIGRTGQGKEFGVT-KARWPAKSVNFIKDLLRNGQANAESKGLDASKLKVSHIQVNQAPKQRRRTYRAHGRINAYQSSPCHIELILT 151          

HSP 2 Score: 35.039 bits (79), Expect = 1.056e-32
Identity = 15/31 (48.39%), Postives = 23/31 (74.19%), Query Frame = -3
Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            +KNTRETA AI    L +A++YL+ V+ H++
Sbjct:   26 YKNTRETAQAISGWKLERAQKYLDQVLDHQR 56          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17B_SCHPO (60S ribosomal protein L17-B OS=Schizosaccharomyces pombe GN=rpl17b PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.333e-32
Identity = 63/97 (64.95%), Postives = 73/97 (75.26%), Query Frame = -1
Query:  278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568
            +A+PF RF GGVGRTAQ K      Q RWPVKS  F  DLLKNAE+NAE KGLD+D L I H+QVN A KQRRRTYRAHGR+  Y+SSP HIE+ ++
Sbjct:   56 QAVPFRRFNGGVGRTAQGKEFGVT-QARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVA 151          

HSP 2 Score: 31.187 bits (69), Expect = 2.333e-32
Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = -3
Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKN+RE A  I  + L KA  +L++V  HKQ
Sbjct:   26 FKNSREVAFTINGMNLKKAFIFLDNVKEHKQ 56          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_THEPA (60S ribosomal protein L17 OS=Theileria parva GN=RPL17 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.153e-32
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = -1
Query:  287 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 568
            R +PF +F GGVGR AQAK    + QGRWP KS KF+LDLLKN ESNAEVKGL+   L + H+QVN+A   RRR+YRAHGRI P++S PCH+EL
Sbjct:   56 RCVPFRKFRGGVGRCAQAK-AFKHTQGRWPEKSCKFLLDLLKNLESNAEVKGLEQSKLRLEHVQVNRAPVGRRRSYRAHGRIIPFLSHPCHVEL 148          

HSP 2 Score: 35.039 bits (79), Expect = 5.153e-32
Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = -3
Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNT ETA AI+ + +  AKRYL DV+  K+
Sbjct:   26 FKNTYETATAIKGMLVKDAKRYLNDVIERKR 56          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_THEAN (60S ribosomal protein L17 OS=Theileria annulata GN=RPL17 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.711e-32
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = -1
Query:  287 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 568
            R +PF +F GGVGR AQAK    + QGRWP KS KF+LDLLKN ESNAEVKGL+   L + H+QVN+A   RRR+YRAHGRI P++S PCH+EL
Sbjct:   56 RCVPFRKFRGGVGRCAQAK-AFKHTQGRWPEKSCKFLLDLLKNLESNAEVKGLEQSKLRLEHVQVNRAPVGRRRSYRAHGRIIPFLSHPCHVEL 148          

HSP 2 Score: 34.6538 bits (78), Expect = 6.711e-32
Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = -3
Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNT ETA AI+ + +  AKRYL DV+  K+
Sbjct:   26 FKNTYETATAIKGMLVKDAKRYLNDVIDRKR 56          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_AEDAL (60S ribosomal protein L17 OS=Aedes albopictus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.252e-31
Identity = 68/111 (61.26%), Postives = 84/111 (75.68%), Query Frame = -1
Query:  278 RRLRGIWRMLWPINRAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 610
            RR +   + +      +PF RF GGVGR AQAK+ + +  GRWP KSA+F+L LLKNAE+NA+ +GLDVD L + HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL+L+
Sbjct:   42 RRAQKFLKNVCEKKECVPFRRFNGGVGRCAQAKHWNTS-VGRWPKKSAEFLLQLLKNAEANADYRGLDVDRLVVDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIELSLT 151          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_AEDAE (60S ribosomal protein L17 OS=Aedes aegypti GN=RpL17 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.252e-31
Identity = 68/111 (61.26%), Postives = 84/111 (75.68%), Query Frame = -1
Query:  278 RRLRGIWRMLWPINRAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 610
            RR +   + +      +PF RF GGVGR AQAK+ + +  GRWP KSA+F+L LLKNAE+NA+ +GLDVD L + HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL+L+
Sbjct:   42 RRAQKFLKNVCEKKECVPFRRFNGGVGRCAQAKHWNTS-VGRWPKKSAEFLLQLLKNAEANADYRGLDVDRLVVDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIELSLT 151          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_DROPS (60S ribosomal protein L17 OS=Drosophila pseudoobscura pseudoobscura GN=RpL17 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.017e-31
Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = -1
Query:  278 RRLRGIWRMLWPINRAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 610
            RR +   + +      +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAE+NA+ KGLD D + + HIQVN+AQ  RRRTYRAHGRINPYMSSPCH+E+ L+
Sbjct:   42 RRAQRFLKAVIDQKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRMVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILT 151          
The following BLAST results are available for this feature:
BLAST of CN185474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL17_DICDI1.276e-3365.2660S ribosomal protein L17 OS=Dictyostelium discoid... [more]
RL17_YARLI3.672e-3359.3260S ribosomal protein L17 OS=Yarrowia lipolytica G... [more]
RL17A_SCHPO4.780e-3365.9860S ribosomal protein L17-A OS=Schizosaccharomyces... [more]
RL17_DEBHA1.056e-3264.9560S ribosomal protein L17 OS=Debaryomyces hansenii... [more]
RL17B_SCHPO2.333e-3264.9560S ribosomal protein L17-B OS=Schizosaccharomyces... [more]
RL17_THEPA5.153e-3263.8360S ribosomal protein L17 OS=Theileria parva GN=RP... [more]
RL17_THEAN6.711e-3263.8360S ribosomal protein L17 OS=Theileria annulata GN... [more]
RL17_AEDAL2.252e-3161.2660S ribosomal protein L17 OS=Aedes albopictus GN=R... [more]
RL17_AEDAE2.252e-3161.2660S ribosomal protein L17 OS=Aedes aegypti GN=RpL1... [more]
RL17_DROPS5.017e-3159.4660S ribosomal protein L17 OS=Drosophila pseudoobsc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185474 ID=CN185474; Name=CN185474; organism=Citrus sinensis; type=EST; length=661bp
AAAAGTCTTTAATTTTCATAAAGCTCCAACAGTATGACTGAGGATTCTAA
CAAAACAGTAAACTGGACGTAATATGAAATAAACAAAATATGATGTCTGA
TTTGACTAAATAACATCTCAGTCACTATTAAAGGTAAAAAAACTCACTTC
ATCAAGAACACAAAATAGAAAATCAGGGCACTCTCCAATTGCTATGCTAA
ACCTCAGACAATTACTTCTTTGATTTGCTAGTTGCCAACTGGGTCTCAGG
CTCTTTCTTTACTGGCTCTTCCTTTTCAGATAAGGTCAACTCAATATGGC
AGGGAGAGGACATGTAAGGATTAATTCTTCCATGAGCACGGTATGTGCGG
CGCCTTTGCTTTTGTGCCTGGTTGACTTGGATGTGAGAAATGTAGAGTGC
ATCAACATCTAAACCTTTCACCTCAGCATTACTCTCAGCATTCTTGAGCA
AGTCAAGAATGAACTTTGCTGATTTGACAGGCCATCGTCCCTGTCCATTT
GGATGCCTATTCTTTGCCTGAGCAGTACGTCCAACACCACCGCAGAATCG
TGTGAAGGGAATGGCCCTGTTTATGGGCCATAACATCCTCCAAATACCTC
TTAGCCTTCGTCAAAGGCAATTTCCTGATGGCATGGGCAGTTTCTCTCGT
GTTCTTAAAAT
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