CN185474

Overview
NameCN185474
Unique NameCN185474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_CARGR (60S ribosomal protein L17 OS=Carabus granulatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.118e-30
Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = -1
Query:  278 RRLRGIWRMLWPINRAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 610
            RR +   + +      +PF RF GGVGR +QAK +    QGRWP KSA+F+L +L+NAESNA+  GLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   42 RRAQAFLKNVTDHKECVPFRRFNGGVGRCSQAK-QWGTTQGRWPKKSAEFLLQMLRNAESNADYSGLDVDRLVIEHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEMWLT 151          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_METS3 (50S ribosomal protein L22P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.877e-13
Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = -1
Query:  281 INRAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 574
            + +++PF R    VG     K +     GR+PVK+A+ +L +L+NAE+NAE KG+D + L+I HI  ++         RA GR+ P+ +   HI++ L
Sbjct:   56 MKKSVPFKRHNRQVGHR---KGQEGWAAGRYPVKAAEQVLKVLENAEANAEYKGMDTENLFIEHISSHRGVVLPGVIPRAFGRMTPFNTPTTHIQIVL 150          

HSP 2 Score: 30.8018 bits (68), Expect = 4.877e-13
Identity = 15/30 (50.00%), Postives = 21/30 (70.00%), Query Frame = -3
Query:  567 KNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 656
            K+  E  +AIR + +TKAK YLEDV+  K+
Sbjct:   29 KHCVEICNAIRGMEVTKAKNYLEDVIDMKK 58          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_METBU (50S ribosomal protein L22P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.807e-12
Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = -1
Query:  278 INRAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 574
            + +A+PF R    +G       + P   GR+PVK A  +L LLKNAESNAE KGL+ + ++I+H  +N+ +       RA GR +P  +   ++E+ +S
Sbjct:   55 LKQAVPFGRHNDSLGH-----RKGPMAAGRYPVKVASEMLKLLKNAESNAEYKGLNPEHMFIAHTAMNRGRVIHGMRPRARGRASPENTETVNLEMIIS 148          

HSP 2 Score: 27.7202 bits (60), Expect = 1.807e-12
Identity = 13/30 (43.33%), Postives = 19/30 (63.33%), Query Frame = -3
Query:  567 KNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 656
            K +RE   AI+ +    A++YLEDV+  KQ
Sbjct:   28 KKSRELCKAIKGMRTNAARQYLEDVVILKQ 57          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_IGNH4 (50S ribosomal protein L22P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 37/92 (40.22%), Postives = 53/92 (57.61%), Query Frame = -1
Query:  287 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 562
            +P+ R+ G V       ++H    GR+PVK+AK+ L LLKN E+NAE KGL+V+ L I HI  ++    +R   RA GR  P      H+E+
Sbjct:   62 VPYRRYHGKVAHKRGLADKHGIPMGRYPVKAAKYFLKLLKNVEANAEFKGLEVEKLKIVHIASHKGMTIKRWMPRAFGRATPEFERRTHLEV 153          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_METKA (50S ribosomal protein L22P OS=Methanopyrus kandleri GN=rpl22p PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.118e-12
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = -1
Query:  281 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 490
            GR+P K+A+ IL +L++AE+NAE KGLD D LYI HI  ++ +  R    RA GR  P+ +   HIE+ L
Sbjct:   87 GRFPEKAAREILRVLEHAEANAEYKGLDTDRLYIKHIAAHKGRVIRGWIPRAFGRATPFNTPTTHIEVIL 156          

HSP 2 Score: 27.7202 bits (60), Expect = 5.118e-12
Identity = 12/30 (40.00%), Postives = 19/30 (63.33%), Query Frame = -3
Query:  567 KNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 656
            K+ RE   AIR +PL +AK +L  V+  ++
Sbjct:   34 KHAREICRAIRGMPLDRAKEFLRRVIRKEE 63          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_PYRKO (50S ribosomal protein L22P OS=Pyrococcus kodakaraensis GN=rpl22p PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 4.144e-11
Identity = 38/96 (39.58%), Postives = 49/96 (51.04%), Query Frame = -1
Query:  281 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 568
            R +P  RF    G     K     G GR+PVK AK +  +L NA++NAE KGLDVD L I H   ++    R    RA GR  P+     HIE+ +
Sbjct:   60 RPVPMKRFNDSQGH----KPGKGFGPGRYPVKVAKAVKKILLNAKNNAEQKGLDVDRLKIIHAAAHRGPVLRGYIPRAFGRATPFNEQTTHIEIVV 151          

HSP 2 Score: 26.1794 bits (56), Expect = 4.144e-11
Identity = 13/30 (43.33%), Postives = 19/30 (63.33%), Query Frame = -3
Query:  567 KNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 656
            K++ E    IR + L  A RYL+DV+A K+
Sbjct:   31 KHSVELLREIRGMMLNDALRYLDDVIAKKR 60          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_METTH (50S ribosomal protein L22P OS=Methanobacterium thermoautotrophicum GN=rpl22p PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 5.389e-11
Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = -1
Query:  281 INRAIPFTRFCGGVGRTAQAKNRHPNG--QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 574
            + R + F R+   VG       R  NG   GR+PVK+A  IL +L+NAE+NAE KGLD + L I HI  ++    R    RA GR  P+ +   H+++ L
Sbjct:   56 MERPVAFKRYNRKVGH-----RRGLNGWASGRYPVKAAGQILKVLENAEANAEYKGLDTEKLRIIHISSHRGPVIRGWIPRAFGRATPFNTPTTHVQIVL 150          

HSP 2 Score: 26.1794 bits (56), Expect = 5.389e-11
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = -3
Query:  579 KNTRETAHAIRKLPLTKAKRYLEDVM 656
            K+  E    IR + L KAK+YLE+V+
Sbjct:   29 KHAVEICREIRGMELEKAKKYLEEVI 54          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_THEPD (50S ribosomal protein L22P OS=Thermofilum pendens (strain Hrk 5) GN=rpl22p PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = -1
Query:  287 TREKLPMPSGNCL*RRLRGIWRMLWPINRAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 652
            T E L +  G  +    R I   +  + R++P  R+   VG  +        G GR+PVK AK +L LL N E+NAE KGL+V+ L I H   ++  K R    RA GR  PY     H+E+
Sbjct:   30 TVETLRLIKGKSI-EEARRILTEIAEMKRSVPLKRYNKKVGHRSDVP-----GPGRYPVKVAKNLLKLLDNLENNAEFKGLNVENLRIVHAAAHKGMKIRNYLPRAFGRATPYYDQLVHVEI 145          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_THEVO (50S ribosomal protein L22P OS=Thermoplasma volcanium GN=rpl22p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = -1
Query:  278 AIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 565
            AIP+ R+   V       +R   G GR+PVK+AK  +DLL N E+NAE KG++ D+L I H+  N+ +  ++ T +A+GR         ++E+ ++
Sbjct:   55 AIPYFRYLDSVS------HRPGKGPGRYPVKAAKVFIDLLSNVENNAEFKGMNTDSLIIKHVAANKGRMIKKYTPKAYGRAGANFKDLINLEVIVT 144          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_METBF (50S ribosomal protein L22P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = -1
Query:  278 INRAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 574
            + +A+PF R   G G       + P   GR+PV ++K IL +L+NAESNAE KGL+   +YI+H  + + +  R    RA GR  P  +   +IE+ LS
Sbjct:   55 LKQAVPFKRHHDGSGH-----RKGPMAAGRYPVSASKEILKILRNAESNAEYKGLEPANMYITHAAIQRGRVIRGFMPRARGRATPKDTETVNIEMILS 148          
The following BLAST results are available for this feature:
BLAST of CN185474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL17_CARGR1.118e-3060.3660S ribosomal protein L17 OS=Carabus granulatus GN... [more]
RL22_METS34.877e-1335.7150S ribosomal protein L22P OS=Methanobrevibacter s... [more]
RL22_METBU1.807e-1236.3650S ribosomal protein L22P OS=Methanococcoides bur... [more]
RL22_IGNH43.058e-1240.2250S ribosomal protein L22P OS=Ignicoccus hospitali... [more]
RL22_METKA5.118e-1247.1450S ribosomal protein L22P OS=Methanopyrus kandler... [more]
RL22_PYRKO4.144e-1139.5850S ribosomal protein L22P OS=Pyrococcus kodakarae... [more]
RL22_METTH5.389e-1139.0050S ribosomal protein L22P OS=Methanobacterium the... [more]
RL22_THEPD5.767e-1136.0750S ribosomal protein L22P OS=Thermofilum pendens ... [more]
RL22_THEVO7.531e-1135.4250S ribosomal protein L22P OS=Thermoplasma volcani... [more]
RL22_METBF9.836e-1138.3850S ribosomal protein L22P OS=Methanosarcina barke... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185474 ID=CN185474; Name=CN185474; organism=Citrus sinensis; type=EST; length=661bp
AAAAGTCTTTAATTTTCATAAAGCTCCAACAGTATGACTGAGGATTCTAA
CAAAACAGTAAACTGGACGTAATATGAAATAAACAAAATATGATGTCTGA
TTTGACTAAATAACATCTCAGTCACTATTAAAGGTAAAAAAACTCACTTC
ATCAAGAACACAAAATAGAAAATCAGGGCACTCTCCAATTGCTATGCTAA
ACCTCAGACAATTACTTCTTTGATTTGCTAGTTGCCAACTGGGTCTCAGG
CTCTTTCTTTACTGGCTCTTCCTTTTCAGATAAGGTCAACTCAATATGGC
AGGGAGAGGACATGTAAGGATTAATTCTTCCATGAGCACGGTATGTGCGG
CGCCTTTGCTTTTGTGCCTGGTTGACTTGGATGTGAGAAATGTAGAGTGC
ATCAACATCTAAACCTTTCACCTCAGCATTACTCTCAGCATTCTTGAGCA
AGTCAAGAATGAACTTTGCTGATTTGACAGGCCATCGTCCCTGTCCATTT
GGATGCCTATTCTTTGCCTGAGCAGTACGTCCAACACCACCGCAGAATCG
TGTGAAGGGAATGGCCCTGTTTATGGGCCATAACATCCTCCAAATACCTC
TTAGCCTTCGTCAAAGGCAATTTCCTGATGGCATGGGCAGTTTCTCTCGT
GTTCTTAAAAT
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