CN185474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_CARGR (60S ribosomal protein L17 OS=Carabus granulatus GN=RpL17 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.118e-30 Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = -1 Query: 278 RRLRGIWRMLWPINRAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 610 RR + + + +PF RF GGVGR +QAK + QGRWP KSA+F+L +L+NAESNA+ GLDVD L I HIQVN+A RRRTYRAHGRINPYMSSPCHIE+ L+ Sbjct: 42 RRAQAFLKNVTDHKECVPFRRFNGGVGRCSQAK-QWGTTQGRWPKKSAEFLLQMLRNAESNADYSGLDVDRLVIEHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEMWLT 151
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_METS3 (50S ribosomal protein L22P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl22p PE=3 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 4.877e-13 Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = -1 Query: 281 INRAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 574 + +++PF R VG K + GR+PVK+A+ +L +L+NAE+NAE KG+D + L+I HI ++ RA GR+ P+ + HI++ L Sbjct: 56 MKKSVPFKRHNRQVGHR---KGQEGWAAGRYPVKAAEQVLKVLENAEANAEYKGMDTENLFIEHISSHRGVVLPGVIPRAFGRMTPFNTPTTHIQIVL 150 HSP 2 Score: 30.8018 bits (68), Expect = 4.877e-13 Identity = 15/30 (50.00%), Postives = 21/30 (70.00%), Query Frame = -3 Query: 567 KNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 656 K+ E +AIR + +TKAK YLEDV+ K+ Sbjct: 29 KHCVEICNAIRGMEVTKAKNYLEDVIDMKK 58
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_METBU (50S ribosomal protein L22P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl22p PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.807e-12 Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = -1 Query: 278 INRAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 574 + +A+PF R +G + P GR+PVK A +L LLKNAESNAE KGL+ + ++I+H +N+ + RA GR +P + ++E+ +S Sbjct: 55 LKQAVPFGRHNDSLGH-----RKGPMAAGRYPVKVASEMLKLLKNAESNAEYKGLNPEHMFIAHTAMNRGRVIHGMRPRARGRASPENTETVNLEMIIS 148 HSP 2 Score: 27.7202 bits (60), Expect = 1.807e-12 Identity = 13/30 (43.33%), Postives = 19/30 (63.33%), Query Frame = -3 Query: 567 KNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 656 K +RE AI+ + A++YLEDV+ KQ Sbjct: 28 KKSRELCKAIKGMRTNAARQYLEDVVILKQ 57
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_IGNH4 (50S ribosomal protein L22P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl22p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12 Identity = 37/92 (40.22%), Postives = 53/92 (57.61%), Query Frame = -1 Query: 287 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 562 +P+ R+ G V ++H GR+PVK+AK+ L LLKN E+NAE KGL+V+ L I HI ++ +R RA GR P H+E+ Sbjct: 62 VPYRRYHGKVAHKRGLADKHGIPMGRYPVKAAKYFLKLLKNVEANAEFKGLEVEKLKIVHIASHKGMTIKRWMPRAFGRATPEFERRTHLEV 153
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_METKA (50S ribosomal protein L22P OS=Methanopyrus kandleri GN=rpl22p PE=3 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 5.118e-12 Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = -1 Query: 281 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 490 GR+P K+A+ IL +L++AE+NAE KGLD D LYI HI ++ + R RA GR P+ + HIE+ L Sbjct: 87 GRFPEKAAREILRVLEHAEANAEYKGLDTDRLYIKHIAAHKGRVIRGWIPRAFGRATPFNTPTTHIEVIL 156 HSP 2 Score: 27.7202 bits (60), Expect = 5.118e-12 Identity = 12/30 (40.00%), Postives = 19/30 (63.33%), Query Frame = -3 Query: 567 KNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 656 K+ RE AIR +PL +AK +L V+ ++ Sbjct: 34 KHAREICRAIRGMPLDRAKEFLRRVIRKEE 63
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_PYRKO (50S ribosomal protein L22P OS=Pyrococcus kodakaraensis GN=rpl22p PE=3 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 4.144e-11 Identity = 38/96 (39.58%), Postives = 49/96 (51.04%), Query Frame = -1 Query: 281 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 568 R +P RF G K G GR+PVK AK + +L NA++NAE KGLDVD L I H ++ R RA GR P+ HIE+ + Sbjct: 60 RPVPMKRFNDSQGH----KPGKGFGPGRYPVKVAKAVKKILLNAKNNAEQKGLDVDRLKIIHAAAHRGPVLRGYIPRAFGRATPFNEQTTHIEIVV 151 HSP 2 Score: 26.1794 bits (56), Expect = 4.144e-11 Identity = 13/30 (43.33%), Postives = 19/30 (63.33%), Query Frame = -3 Query: 567 KNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 656 K++ E IR + L A RYL+DV+A K+ Sbjct: 31 KHSVELLREIRGMMLNDALRYLDDVIAKKR 60
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_METTH (50S ribosomal protein L22P OS=Methanobacterium thermoautotrophicum GN=rpl22p PE=3 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 5.389e-11 Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = -1 Query: 281 INRAIPFTRFCGGVGRTAQAKNRHPNG--QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 574 + R + F R+ VG R NG GR+PVK+A IL +L+NAE+NAE KGLD + L I HI ++ R RA GR P+ + H+++ L Sbjct: 56 MERPVAFKRYNRKVGH-----RRGLNGWASGRYPVKAAGQILKVLENAEANAEYKGLDTEKLRIIHISSHRGPVIRGWIPRAFGRATPFNTPTTHVQIVL 150 HSP 2 Score: 26.1794 bits (56), Expect = 5.389e-11 Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = -3 Query: 579 KNTRETAHAIRKLPLTKAKRYLEDVM 656 K+ E IR + L KAK+YLE+V+ Sbjct: 29 KHAVEICREIRGMELEKAKKYLEEVI 54
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_THEPD (50S ribosomal protein L22P OS=Thermofilum pendens (strain Hrk 5) GN=rpl22p PE=3 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11 Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = -1 Query: 287 TREKLPMPSGNCL*RRLRGIWRMLWPINRAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 652 T E L + G + R I + + R++P R+ VG + G GR+PVK AK +L LL N E+NAE KGL+V+ L I H ++ K R RA GR PY H+E+ Sbjct: 30 TVETLRLIKGKSI-EEARRILTEIAEMKRSVPLKRYNKKVGHRSDVP-----GPGRYPVKVAKNLLKLLDNLENNAEFKGLNVENLRIVHAAAHKGMKIRNYLPRAFGRATPYYDQLVHVEI 145
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_THEVO (50S ribosomal protein L22P OS=Thermoplasma volcanium GN=rpl22p PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11 Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = -1 Query: 278 AIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 565 AIP+ R+ V +R G GR+PVK+AK +DLL N E+NAE KG++ D+L I H+ N+ + ++ T +A+GR ++E+ ++ Sbjct: 55 AIPYFRYLDSVS------HRPGKGPGRYPVKAAKVFIDLLSNVENNAEFKGMNTDSLIIKHVAANKGRMIKKYTPKAYGRAGANFKDLINLEVIVT 144
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL22_METBF (50S ribosomal protein L22P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl22p PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11 Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = -1 Query: 278 INRAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 574 + +A+PF R G G + P GR+PV ++K IL +L+NAESNAE KGL+ +YI+H + + + R RA GR P + +IE+ LS Sbjct: 55 LKQAVPFKRHHDGSGH-----RKGPMAAGRYPVSASKEILKILRNAESNAEYKGLEPANMYITHAAIQRGRVIRGFMPRARGRATPKDTETVNIEMILS 148 The following BLAST results are available for this feature:
BLAST of CN185474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185474 ID=CN185474; Name=CN185474; organism=Citrus sinensis; type=EST; length=661bpback to top |