CN185473

Overview
NameCN185473
Unique NameCN185473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185473 vs. ExPASy Swiss-Prot
Match: PPIB_MYCTU (Probable peptidyl-prolyl cis-trans isomerase B OS=Mycobacterium tuberculosis GN=ppiB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 54/170 (31.76%), Postives = 81/170 (47.65%), Query Frame = 1
Query:    7 KMSVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDE------------IRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRV-IHGFEVLDLMEKAQTGSG---DRPLAEIRINRVTI 468
            ++SV++ TN G+I   +A +E P T  +F++L   G++ GT  HR     M+                G +F +E            + E + +  RG L+MAN+GPNTN SQFF+ Y +   L   YTVFG +   G   LD + KA    G    +P  E+ I  V +
Sbjct:  140 QVSVSMVTNQGNIGLMLANNESPCTVNSFVSLAQQGFFKGTTCHRLTTSPMLAVLQCGDPKGDGTGGPGYQFANEYPTDQYSANDPKLNEPVIY-PRGTLAMANAGPNTNSSQFFMVY-RDSKLPPQYTVFGTIQADGLTTLDKIAKAGVAGGGEDGKPATEVTITSVLL 307          
BLAST of CN185473 vs. ExPASy Swiss-Prot
Match: PPIA_DICD3 (Peptidyl-prolyl cis-trans isomerase A OS=Dickeya dadantii (strain 3937) GN=rotA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 48/140 (34.29%), Postives = 70/140 (50.00%), Query Frame = 1
Query:   16 VTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNG-SQFFISYAKQPHLNG-----LYTVFGRVIHGFEVLDLMEKAQT 417
            V L T+ G+I+  +   + P   +NF+    SG+Y+GTIFHR I GFM+Q            +       +E    L+ N RG +SMA +    +  SQFFI+ A    L+       Y VFG+V+ G EV D + + QT
Sbjct:   30 VLLTTSAGNIELALDDQKAPVFVKNFVDYVNSGFYNGTIFHRVIPGFMVQGGGFSSDMKQKAT--NPPVKNEADNGLR-NLRGTISMARTSEKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMEVADKISQVQT 166          
BLAST of CN185473 vs. ExPASy Swiss-Prot
Match: PPIA_SALTY (Peptidyl-prolyl cis-trans isomerase A OS=Salmonella typhimurium GN=ppiA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.665e-11
Identity = 48/148 (32.43%), Postives = 73/148 (49.32%), Query Frame = 1
Query:    1 RGKMSVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKH---NARGILSMANSGPNTNG-SQFFISYAKQPHLNG-----LYTVFGRVIHGFEVLDLMEKAQT 417
            +G   V L T+ G+I+ E+   + P + +NF+    SG+Y+ T FHR I GFMIQ             +  KK N  I+    +   N RG ++MA +    +  SQFFI+ A    L+       Y VFG+V+ G +V D + +  T
Sbjct:   26 KGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQ------GGGFNEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT 167          
BLAST of CN185473 vs. ExPASy Swiss-Prot
Match: PPIA_ECOLI (Peptidyl-prolyl cis-trans isomerase A OS=Escherichia coli (strain K12) GN=ppiA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 48/148 (32.43%), Postives = 73/148 (49.32%), Query Frame = 1
Query:    1 RGKMSVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKH---NARGILSMANSGPNTNG-SQFFISYAKQPHLNG-----LYTVFGRVIHGFEVLDLMEKAQT 417
            +G   V L T+ G+I+ E+   + P + +NF+    SG+Y+ T FHR I GFMIQ             +  KK N  I+    +   N RG ++MA +    +  SQFFI+ A    L+       Y VFG+V+ G +V D + +  T
Sbjct:   26 KGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ------GGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT 167          
BLAST of CN185473 vs. ExPASy Swiss-Prot
Match: PPIA_ECOL6 (Peptidyl-prolyl cis-trans isomerase A OS=Escherichia coli O6 GN=ppiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 48/148 (32.43%), Postives = 73/148 (49.32%), Query Frame = 1
Query:    1 RGKMSVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKH---NARGILSMANSGPNTNG-SQFFISYAKQPHLNG-----LYTVFGRVIHGFEVLDLMEKAQT 417
            +G   V L T+ G+I+ E+   + P + +NF+    SG+Y+ T FHR I GFMIQ             +  KK N  I+    +   N RG ++MA +    +  SQFFI+ A    L+       Y VFG+V+ G +V D + +  T
Sbjct:   26 KGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ------GGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT 167          
BLAST of CN185473 vs. ExPASy Swiss-Prot
Match: PPIA_ECO57 (Peptidyl-prolyl cis-trans isomerase A OS=Escherichia coli O157:H7 GN=ppiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 48/148 (32.43%), Postives = 73/148 (49.32%), Query Frame = 1
Query:    1 RGKMSVTLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKH---NARGILSMANSGPNTNG-SQFFISYAKQPHLNG-----LYTVFGRVIHGFEVLDLMEKAQT 417
            +G   V L T+ G+I+ E+   + P + +NF+    SG+Y+ T FHR I GFMIQ             +  KK N  I+    +   N RG ++MA +    +  SQFFI+ A    L+       Y VFG+V+ G +V D + +  T
Sbjct:   26 KGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ------GGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT 167          
BLAST of CN185473 vs. ExPASy Swiss-Prot
Match: CP21C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial OS=Arabidopsis thaliana GN=CYP21-3 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 46/150 (30.67%), Postives = 68/150 (45.33%), Query Frame = 1
Query:   19 TLHTNLGDIKCEIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 468
            TL T  G +  E+  D  P   + F+  C  GY+ G +F R +K F+IQ                +K    I  SLKH    ++    +     G +FFI  A+   LN   TVFGRV  G +V+  +E+ +T    +P + I I  VT+
Sbjct:   81 TLDTGKGSVTIELFKDTAPNVVDQFMKFCQDGYFKGFLFSRVVKHFVIQAGDSAEFDAVKDWALDRK---NIDTSLKHE-EFMVGTPKAKNEQGGFEFFIVSAQIKDLNEKLTVFGRVSKGQDVVQEIEEVETDDQYQPKSPIEIMSVTL 226          
The following BLAST results are available for this feature:
BLAST of CN185473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
PPIB_MYCTU9.645e-1231.76Probable peptidyl-prolyl cis-trans isomerase B OS=... [more]
PPIA_DICD32.806e-1134.29Peptidyl-prolyl cis-trans isomerase A OS=Dickeya d... [more]
PPIA_SALTY3.665e-1132.43Peptidyl-prolyl cis-trans isomerase A OS=Salmonell... [more]
PPIA_ECOLI4.787e-1132.43Peptidyl-prolyl cis-trans isomerase A OS=Escherich... [more]
PPIA_ECOL64.787e-1132.43Peptidyl-prolyl cis-trans isomerase A OS=Escherich... [more]
PPIA_ECO574.787e-1132.43Peptidyl-prolyl cis-trans isomerase A OS=Escherich... [more]
CP21C_ARATH8.165e-1130.67Peptidyl-prolyl cis-trans isomerase CYP21-3, mitoc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185473 ID=CN185473; Name=CN185473; organism=Citrus sinensis; type=EST; length=688bp
AGGGGTAAGATGTCGGTAACTCTACACACTAATCTGGGTGATATTAAGTG
CGAGATTGCTTGCGACGAAGTCCCTAAGACGGCTGAGAATTTTTTGGCAC
TATGCGCGAGTGGTTACTACGATGGGACCATTTTTCACCGGAATATTAAA
GGTTTTATGATTCAAGGTGGAGACCCAACAGGCACTGGAAAAGGCGGAAC
AAGCATATGGGGCAAGAAGTTCAATGATGAGATAAGGGAGTCCCTCAAGC
ATAATGCTAGAGGGATACTGTCAATGGCCAATAGTGGCCCTAACACTAAT
GGAAGCCAATTCTTCATCTCTTATGCAAAGCAGCCCCATCTTAACGGATT
GTACACTGTGTTTGGTAGAGTAATTCATGGGTTCGAAGTTCTTGACCTTA
TGGAAAAGGCTCAAACTGGATCAGGGGACCGGCCACTTGCGGAGATAAGG
ATCAATCGAGTTACCATACATGCTAACCCACTTGCTGTCTAGCTTTGTCT
GAAAATTTCTTGTTGTATAACATTGTAAAGAGGCTTAGTGTGGAGTGGGA
ACAGTGACTTACGATTAAACTCCCAGTAGACTCTGTACATTTTTCTTTTC
CCAGTTATGACTATGGGCTTGAAGGAAGAAGTAACCGCAGAATTTTATGT
AGCATCAAATGGTGAGATTGACGATTGAGAAAAAAAAA
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