CN185472

Overview
NameCN185472
Unique NameCN185472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 6.534e-17
Identity = 54/128 (42.19%), Postives = 70/128 (54.69%), Query Frame = -3
Query:  286 NFLALCASG-----------YYDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRP 633
            NF ALC              ++ G  FHR IK FMIQ             SI+G+KF DE     KH+  G+ SMAN+GPNTNGSQFFI+    PHL+G + VFG+VI G  V   +E  +  +G++P
Sbjct:   47 NFRALCTGEKGTGSTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDE-NFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEV-NGEKP 172          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPID_CRYNE (Peptidyl-prolyl cis-trans isomerase D OS=Cryptococcus neoformans GN=CPR6 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = -3
Query:  265 YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRIN 603
            Y G+ FHR IKGFM+Q             SI+G+KF DE  E LKH+   + SMAN+GP TNGSQFFI+    PHL+G + VFGRVI+   ++  +E   T S DRP   + I+
Sbjct:   54 YAGSSFHRCIKGFMLQGGDFTRGDGTGGESIYGEKFEDENFE-LKHDKPMLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGRVIYNRSLVRRIENIPTTS-DRPDQAVTIS 165          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPIB_HUMAN (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 55/126 (43.65%), Postives = 74/126 (58.73%), Query Frame = -3
Query:  268 NFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 633
            NF+AL     G+ Y  + FHR IK FMIQ             SI+G++F DE    LKH   G  SMAN+G +TNGSQFFI+  K   L+G + VFG+V+ G EV+  +E  +T S D+PL ++ I
Sbjct:   75 NFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVII 199          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPIL3_ASPFU (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Aspergillus fumigatus GN=cyp10 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 72/185 (38.92%), Postives = 88/185 (47.57%), Query Frame = -3
Query:  235 NFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXT------------------SIWGKK-FNDEIR-ESLKHNARGIPSMAN--------------SGPNTNGSQFFISYAKQPHLNGLYTVFGRVIH------GFEVLDLMEKA-----------QTGSGDRPLAE-IRINRVTIHANPLA 633
            NFLALCA G Y+ T FHR   GFMIQ           T                  SI+  +  N EI   +L+HNARGI SMA+              +G   NGSQFFI++A  PHL+G  TVFG+V++      G +VL  +EKA           Q   G+    E I IN VTIHANP A
Sbjct:   27 NFLALCACGAYNNTPFHRIFPGFMIQGGDISLGPAPGTLNTLKPMLPVNEIPKGGTSIYHPRALNQEIHLPALRHNARGILSMASRPVKDRTAPGSQGATGATVNGSQFFITFAAAPHLDGASTVFGKVLNLSPQDEGGDVLSKLEKAKLKVDKKGRVTQPKEGEEGGYEAIGINSVTIHANPFA 211          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = -3
Query:  268 NFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 633
            NF+AL     G+ + G+ FHR IK FMIQ             SI+G +F DE    LKH   G  SMAN+G +TNGSQFFI+  K   L+G + VFG+V+ G +V+  +E  +T S D+PL ++ I
Sbjct:   66 NFVALATGEKGFGFKGSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTI 190          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPIA_MYCLE (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium leprae GN=ppiA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 48/120 (40.00%), Postives = 66/120 (55.00%), Query Frame = -3
Query:  253 YYDGTIFHRNIKGFMIQXXXXXXXXXXXTSIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVI--HGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 606
            +YDG +FHR I+GFMIQ               G KF DE    L+ +   + +MAN+GP TNGSQFFI+  + PHLN  +T+FG V      +V+D +    T   DRP   + I+ +TI
Sbjct:   65 FYDGAVFHRVIQGFMIQGGDPTGTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGETPHLNRRHTIFGEVTDPDSQKVVDAISTTATDGNDRPTEPVVIDSITI 181          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 58/126 (46.03%), Postives = 71/126 (56.35%), Query Frame = -3
Query:  268 NFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 633
            NF ALC    G+ Y G  FHR I  FMIQ             SI+G KF DE     KH+  G+ SMAN+GPNTNGSQFFI+    P L+G + VFG V  G +++  +E   T SG +P AEI I
Sbjct:   53 NFRALCTGEKGWGYKGVPFHRIIPDFMIQGGDTDLTNGFGGKSIYGSKFADE-NFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGTASG-KPRAEIVI 176          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPID_YARLI (Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia lipolytica GN=CPR6 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 51/133 (38.35%), Postives = 73/133 (54.89%), Query Frame = -3
Query:  268 NFLALCASG----------YYDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 633
            NF ALC             ++ G+ FHR IK FM+Q             SI+G+KF DE      H+   + SMAN+GPNTNGSQFFI+  + PHL+  + VFG+++ G  ++  +E+ +TG  DRP   + I
Sbjct:   35 NFRALCTGEKGNTQAGIPLHFKGSSFHRVIKDFMVQGGDFTAGNGTGGESIYGEKFPDEAFP-YPHDQPFLLSMANAGPNTNGSQFFITTTETPHLDNKHVVFGKLLSGKGIVRQIERTETGEQDRPKQPVTI 166          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 54/127 (42.52%), Postives = 69/127 (54.33%), Query Frame = -3
Query:  286 NFLALCASG----------YYDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRP 633
            NF ALC             +Y G+ FHR IK FMIQ             SI+G KF DE    LKH+   + SMAN+GP TNGSQFF++    PHL+G + VFG V+ G  V+  +E  +T  GD+P
Sbjct:   43 NFRALCTGEKGVGKLGKPLHYKGSTFHRVIKQFMIQGGDFTAGNGTGGESIYGAKFEDE-NFQLKHDRPFLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVLSGKSVVRQIENLKT-QGDKP 167          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPIC_BOVIN (Peptidyl-prolyl cis-trans isomerase C OS=Bos taurus GN=PPIC PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 56/126 (44.44%), Postives = 70/126 (55.56%), Query Frame = -3
Query:  268 NFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 633
            NF+AL     GY Y G+ FHR IK FMIQ             SI+G+ F DE    LKH   G  SMAN+GP+TNGSQFFI+  K   L+G + VFG+V+ G  V+  +E   T   DRP  +  I
Sbjct:   69 NFVALATGEKGYGYKGSKFHRVIKDFMIQGGDFTRGDGTGGISIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPFTDCSI 193          
The following BLAST results are available for this feature:
BLAST of CN185472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
PPID_MOUSE6.534e-1742.1940 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPID_CRYNE8.534e-1746.49Peptidyl-prolyl cis-trans isomerase D OS=Cryptococ... [more]
PPIB_HUMAN8.534e-1743.65Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi... [more]
PPIL3_ASPFU1.115e-1638.92Peptidyl-prolyl cis-trans isomerase-like 3 OS=Aspe... [more]
PPIB_CHICK1.115e-1642.86Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
PPIA_MYCLE1.115e-1640.00Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
CYPC_YEAST1.115e-1646.03Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
PPID_YARLI1.456e-1638.35Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia ... [more]
PPID_NEUCR1.456e-1642.5241 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]
PPIC_BOVIN1.456e-1644.44Peptidyl-prolyl cis-trans isomerase C OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185472 ID=CN185472; Name=CN185472; organism=Citrus sinensis; type=EST; length=635bp
GGGGGGGGGGGGGGGGGGGCGGCGCGCCCCCTTTTTTTTTTTTCATCGTC
AATCTCACCATTTGATGCTACATAAAATTCTGCCTTTACTTCTTCCTTCA
AGCCCATAGTCATAACTGAGGAACCTTAAAATGTACAGAGTCTACTGGGA
GTTTAATCGTAAGTCACTGTTCCCACTCCACACTAAGCCTCTTTACAATG
TTATACAACAAGAAATTTTCAGACAAAGCTAGACAGCAAGGGGGTTAGCA
TGTATGGTAACTCGATTGATCCTTATCTCCGCAAGTGGCCGGTCCCCTGA
TCCAGTTTGAGCCTTTTCCATAAGGTCAAGAACTTCGAACCCATGAATTA
CTCTACCAAACACAGTGTACAATCCGTTAAGATGGGGCTGCTTTGCATAA
GAGATGAAGAATTGGCTTCCATTAGTGTTAGGGCCACTATTGGCCATTGA
CGGGATCCCTCTAGCATTATGCTTGAGGGACTCCCTTATCTCATCATTGA
ACTTCTTGCCCCATATGCTTGTTCCGCCTTTTCCAGTGCCTGTTGGGTCT
CCACCTTGAATCATAAAACCTTTAATATTCCGGTGAAAAATGGTCCCATC
ATAGTAACCACTCGCGCATAATGCCAAAAAATTCT
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