CN185472

Overview
NameCN185472
Unique NameCN185472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPIA_PIG (Peptidyl-prolyl cis-trans isomerase A OS=Sus scrofa GN=PPIA PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 54/117 (46.15%), Postives = 69/117 (58.97%), Query Frame = -3 
Query:  295 NFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG 633
            NF AL     G+ Y G+ FHR I GFM Q             SI+G+KF+DE    LKH   GI SMAN+GPNTNGSQFFI  AK   L+G + VFG+V  G  +++ ME+  + +G
Sbjct:   35 NFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNG 150
[Close]
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPIA_BOVIN (Peptidyl-prolyl cis-trans isomerase A OS=Bos taurus GN=PPIA PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 54/117 (46.15%), Postives = 69/117 (58.97%), Query Frame = -3 
Query:  295 NFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG 633
            NF AL     G+ Y G+ FHR I GFM Q             SI+G+KF+DE    LKH   GI SMAN+GPNTNGSQFFI  AK   L+G + VFG+V  G  +++ ME+  + +G
Sbjct:   35 NFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNG 150
[Close]
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPIB_RAT (Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = -3 
Query:  268 NFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 633
            NF+AL     G+ Y  + FHR IK FMIQ             SI+G++F DE    LKH   G  SMAN+G +TNGSQFFI+  K   L+G + VFG+V+ G +V+  +E  +T S D+PL ++ I
Sbjct:   75 NFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVII 199
[Close]
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = -3 
Query:  268 NFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 633
            NF+AL     G+ Y  + FHR IK FMIQ             SI+G++F DE    LKH   G  SMAN+G +TNGSQFFI+  K   L+G + VFG+V+ G +V+  +E  +T S D+PL ++ I
Sbjct:   75 NFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVII 199
[Close]
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = -3 
Query:  295 NFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG 633
            NF AL     G+ Y G+ FHR I GFM Q             SI+G+KF DE    LKH   GI SMAN+GPNTNGSQFFI  AK   L+G + VFGRV  G  +++ ME   + +G
Sbjct:   35 NFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDE-NFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRVKEGMSIVEAMEHFGSENG 150
[Close]
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPIA_PONPY (Peptidyl-prolyl cis-trans isomerase A OS=Pongo pygmaeus GN=PPIA PE=2 SV=4)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 54/117 (46.15%), Postives = 68/117 (58.12%), Query Frame = -3 
Query:  295 NFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG 633
            NF AL     G+ Y G+ FHR I GFM Q             SI+G+KF DE    LKH   GI SMAN+GPNTNGSQFFI  AK   L+G + VFG+V  G  +++ ME+  + +G
Sbjct:   35 NFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNG 150
[Close]
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPIA_PAPAN (Peptidyl-prolyl cis-trans isomerase A OS=Papio anubis GN=PPIA PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 54/117 (46.15%), Postives = 68/117 (58.12%), Query Frame = -3 
Query:  295 NFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG 633
            NF AL     G+ Y G+ FHR I GFM Q             SI+G+KF DE    LKH   GI SMAN+GPNTNGSQFFI  AK   L+G + VFG+V  G  +++ ME+  + +G
Sbjct:   35 NFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNG 150
[Close]
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPIA_PANTR (Peptidyl-prolyl cis-trans isomerase A OS=Pan troglodytes GN=PPIA PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 54/117 (46.15%), Postives = 68/117 (58.12%), Query Frame = -3 
Query:  295 NFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG 633
            NF AL     G+ Y G+ FHR I GFM Q             SI+G+KF DE    LKH   GI SMAN+GPNTNGSQFFI  AK   L+G + VFG+V  G  +++ ME+  + +G
Sbjct:   35 NFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNG 150
[Close]
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPIA_PANPA (Peptidyl-prolyl cis-trans isomerase A OS=Pan paniscus GN=PPIA PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 54/117 (46.15%), Postives = 68/117 (58.12%), Query Frame = -3 
Query:  295 NFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG 633
            NF AL     G+ Y G+ FHR I GFM Q             SI+G+KF DE    LKH   GI SMAN+GPNTNGSQFFI  AK   L+G + VFG+V  G  +++ ME+  + +G
Sbjct:   35 NFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNG 150
[Close]
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPIA_MACMU (Peptidyl-prolyl cis-trans isomerase A OS=Macaca mulatta GN=PPIA PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 54/117 (46.15%), Postives = 68/117 (58.12%), Query Frame = -3 
Query:  295 NFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG 633
            NF AL     G+ Y G+ FHR I GFM Q             SI+G+KF DE    LKH   GI SMAN+GPNTNGSQFFI  AK   L+G + VFG+V  G  +++ ME+  + +G
Sbjct:   35 NFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNG 150
The following BLAST results are available for this feature:
BLAST of CN185472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
PPIA_PIG1.456e-1646.15Peptidyl-prolyl cis-trans isomerase A OS=Sus scrof... [more]
PPIA_BOVIN1.456e-1646.15Peptidyl-prolyl cis-trans isomerase A OS=Bos tauru... [more]
PPIB_RAT1.901e-1642.86Peptidyl-prolyl cis-trans isomerase B OS=Rattus no... [more]
PPIB_MOUSE1.901e-1642.86Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
PPIA_RABIT1.901e-1647.01Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
PPIA_PONPY1.901e-1646.15Peptidyl-prolyl cis-trans isomerase A OS=Pongo pyg... [more]
PPIA_PAPAN1.901e-1646.15Peptidyl-prolyl cis-trans isomerase A OS=Papio anu... [more]
PPIA_PANTR1.901e-1646.15Peptidyl-prolyl cis-trans isomerase A OS=Pan trogl... [more]
PPIA_PANPA1.901e-1646.15Peptidyl-prolyl cis-trans isomerase A OS=Pan panis... [more]
PPIA_MACMU1.901e-1646.15Peptidyl-prolyl cis-trans isomerase A OS=Macaca mu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185472 ID=CN185472; Name=CN185472; organism=Citrus sinensis; type=EST; length=635bp
GGGGGGGGGGGGGGGGGGGCGGCGCGCCCCCTTTTTTTTTTTTCATCGTC
AATCTCACCATTTGATGCTACATAAAATTCTGCCTTTACTTCTTCCTTCA
AGCCCATAGTCATAACTGAGGAACCTTAAAATGTACAGAGTCTACTGGGA
GTTTAATCGTAAGTCACTGTTCCCACTCCACACTAAGCCTCTTTACAATG
TTATACAACAAGAAATTTTCAGACAAAGCTAGACAGCAAGGGGGTTAGCA
TGTATGGTAACTCGATTGATCCTTATCTCCGCAAGTGGCCGGTCCCCTGA
TCCAGTTTGAGCCTTTTCCATAAGGTCAAGAACTTCGAACCCATGAATTA
CTCTACCAAACACAGTGTACAATCCGTTAAGATGGGGCTGCTTTGCATAA
GAGATGAAGAATTGGCTTCCATTAGTGTTAGGGCCACTATTGGCCATTGA
CGGGATCCCTCTAGCATTATGCTTGAGGGACTCCCTTATCTCATCATTGA
ACTTCTTGCCCCATATGCTTGTTCCGCCTTTTCCAGTGCCTGTTGGGTCT
CCACCTTGAATCATAAAACCTTTAATATTCCGGTGAAAAATGGTCCCATC
ATAGTAACCACTCGCGCATAATGCCAAAAAATTCT
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