CN185472

Overview
NameCN185472
Unique NameCN185472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPWD1_HUMAN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.811e-22
Identity = 54/128 (42.19%), Postives = 72/128 (56.25%), Query Frame = -3
Query:  253 NFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXTSIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTG-SGDRPLAEIRINRVTI 633
            NF     +GYY+G  FHR IKGFMIQ            SIWG +F DE   +L+H+     SMAN+G NTNGSQFFI+    P L+  +TVFGRV  G EV+  +   +     D+P  ++ I  +T+
Sbjct:  518 NFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 645          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPWD1_BOVIN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Bos taurus GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.811e-22
Identity = 54/128 (42.19%), Postives = 72/128 (56.25%), Query Frame = -3
Query:  253 NFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXTSIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTG-SGDRPLAEIRINRVTI 633
            NF     +GYY+G  FHR IKGFMIQ            SIWG +F DE   +L+H+     SMAN+G NTNGSQFFI+    P L+  +TVFGRV  G EV+  +   +     D+P  ++ I  +T+
Sbjct:  516 NFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 643          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: BPPI_STRP6 (Putative bifunctional phosphatase/peptidyl-prolyl cis-trans isomerase OS=Streptococcus pyogenes serotype M6 GN=M6_Spy1377 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.151e-21
Identity = 63/156 (40.38%), Postives = 83/156 (53.21%), Query Frame = -3
Query:  253 NFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXTSIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFF------ISYAKQ---------------------PHLNGLYTVFGRVIH--GFEVLDLMEKAQTGSGDRPLAEIRINRVTI 633
            NFL L   GYYDG IFHR I  FMIQ            SI+G+ F DE  + L +N RG  SMAN+GPNTNGSQFF      I YAK+                     PHL+  +TVFG+++    F+VLDL+   +TG+ D+P  ++ I  + +
Sbjct:  314 NFLGLAKEGYYDGIIFHRIIPEFMIQGGDPTGTGMGGQSIYGESFEDEFSDEL-YNLRGALSMANAGPNTNGSQFFIVQNSKIPYAKKELERGGWPTPIAAAYAENGGTPHLDRRHTVFGQLVDETSFQVLDLIAGVETGAQDKPKEDVIIETIEV 468          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.963e-21
Identity = 62/133 (46.62%), Postives = 83/133 (62.41%), Query Frame = -3
Query:  268 NFLALCA-------SG---YYDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 633
            NF ALC        SG   +Y G+ FHR I GFM Q             SI+G KFNDE   +LKH  +G+ SMAN+GPNTNGSQFFI++ K P L+G +TVFG+++ G +VL+++E+  T SG  P A++ I
Sbjct:   38 NFRALCTGEKGTGVSGKPLHYKGSHFHRIIPGFMAQGGDFTMGNGRGGESIYGHKFNDE-NFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLVEGNQVLEILEQHGTQSG-MPTAKVEI 168          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPWD1_MOUSE (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus musculus GN=Ppwd1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.564e-21
Identity = 54/128 (42.19%), Postives = 72/128 (56.25%), Query Frame = -3
Query:  253 NFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXTSIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTG-SGDRPLAEIRINRVTI 633
            NF     +GYY+G  FHR IKGFMIQ            SIWG +F DE   +L+H+     SMAN+G NTNGSQFFI+    P L+  +TVFGRV  G EV+  +   +     D+P  ++ I  +T+
Sbjct:  518 NFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVSKGMEVVQRIFNVKVNPQTDKPYEDVSIINITV 645          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.459e-21
Identity = 59/133 (44.36%), Postives = 78/133 (58.65%), Query Frame = -3
Query:  268 NFLALCA-------SGY---YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 633
            NF ALC        SG    Y+G++FHR I  FM+Q             SI+G KF DE     KH   G+ SMAN+GP TNGSQFFI+    PHL+G + VFG+V+ G +V+  +E  QT  GD+PL+E++I
Sbjct:   32 NFRALCTGEKGIGPSGKKMTYEGSVFHRVIPKFMLQGGDFTLGNGRGGESIYGAKFADE-NFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHVVFGKVVEGMDVVRKIEATQTDRGDKPLSEVKI 163          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: CYP8_CAEEL (Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhabditis elegans GN=cyn-8 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.459e-21
Identity = 57/132 (43.18%), Postives = 77/132 (58.33%), Query Frame = -3
Query:  268 NFLALCAS---------GYYDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 633
            NF A C             Y G++FHR IKGFMIQ             SI+G+ F+DE   +LKH    + SMAN GP+TNGSQFFI+  + PHL+G + VFG VI G EV+  +E  +TG+ D+P+ ++ I
Sbjct:   40 NFRAFCTGELGKMNGHYASYQGSVFHRVIKGFMIQGGDITHGNGTGGYSIYGRTFDDE-NLALKHKKPYLLSMANRGPDTNGSQFFITSEEVPHLDGKHCVFGEVIKGVEVVKAIENLETGNEDKPVCKVEI 170          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: SDC10_XENLA (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Xenopus laevis GN=sdccag10 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 51/133 (38.35%), Postives = 75/133 (56.39%), Query Frame = -3
Query:  241 NFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXTSIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQT--GSGDRPLAEIRINRVTIHANP 633
            NF+ LC  GYYD TIFHR +  F+IQ            S++GK F DE    L+ N RG+ +MAN+GP+ NGSQFF +  +   LN  +T+FG+V  G  + +++  A+   G  +RP+   +I    +  NP
Sbjct:   39 NFVQLCLEGYYDNTIFHRVVPEFIIQGGDPTGTGTGGESVFGKPFRDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTIYNILRLAEVDIGEDERPVNPHKIKCTEVLFNP 170          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 61/129 (47.29%), Postives = 77/129 (59.69%), Query Frame = -3
Query:  280 NFLALCA-------SG---YYDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLA 633
            NF ALC        SG   +Y G+ FHR IK FM+Q             SI+G+ FNDE    +KH   G  SMAN+G NTNGSQFFI+ A+ PHLNG +TVFG V+ GF+++  +E A+T   DRP A
Sbjct:   38 NFRALCTGEKGIGKSGKPLHYKGSSFHRVIKNFMVQGGDFTHGTGIGGESIYGRTFNDE-NFLVKHKI-GCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRPKA 164          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: SDC10_DANRE (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Danio rerio GN=sdccag10 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.662e-20
Identity = 52/133 (39.10%), Postives = 75/133 (56.39%), Query Frame = -3
Query:  241 NFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXTSIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHG--FEVLDLMEKAQTGSGDRPLAEIRINRVTIHANP 633
            NF+ LC  GYYDGTIFHR +  F++Q            SI+G+ F DE    L+ N RG+ +MAN+GP+ NGSQFF +  +   LN  +T+FG+V     + +L L + A  G  +RPL   +I    +  +P
Sbjct:   39 NFVQLCMEGYYDGTIFHRMVPEFIVQGGDPTGTGTGGESIYGRPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLADVACDGD-ERPLNPHKIRSTEVLHSP 170          
The following BLAST results are available for this feature:
BLAST of CN185472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
PPWD1_HUMAN8.811e-2242.19Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_BOVIN8.811e-2242.19Peptidylprolyl isomerase domain and WD repeat-cont... [more]
BPPI_STRP61.151e-2140.38Putative bifunctional phosphatase/peptidyl-prolyl ... [more]
CYP5_RHIOR1.963e-2146.62Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
PPWD1_MOUSE2.564e-2142.19Peptidylprolyl isomerase domain and WD repeat-cont... [more]
CYPX_USEUD7.459e-2144.36Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]
CYP8_CAEEL7.459e-2143.18Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhab... [more]
SDC10_XENLA1.272e-2038.35Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Xe... [more]
PPID_DICDI1.272e-2047.29Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
SDC10_DANRE1.662e-2039.10Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Da... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185472 ID=CN185472; Name=CN185472; organism=Citrus sinensis; type=EST; length=635bp
GGGGGGGGGGGGGGGGGGGCGGCGCGCCCCCTTTTTTTTTTTTCATCGTC
AATCTCACCATTTGATGCTACATAAAATTCTGCCTTTACTTCTTCCTTCA
AGCCCATAGTCATAACTGAGGAACCTTAAAATGTACAGAGTCTACTGGGA
GTTTAATCGTAAGTCACTGTTCCCACTCCACACTAAGCCTCTTTACAATG
TTATACAACAAGAAATTTTCAGACAAAGCTAGACAGCAAGGGGGTTAGCA
TGTATGGTAACTCGATTGATCCTTATCTCCGCAAGTGGCCGGTCCCCTGA
TCCAGTTTGAGCCTTTTCCATAAGGTCAAGAACTTCGAACCCATGAATTA
CTCTACCAAACACAGTGTACAATCCGTTAAGATGGGGCTGCTTTGCATAA
GAGATGAAGAATTGGCTTCCATTAGTGTTAGGGCCACTATTGGCCATTGA
CGGGATCCCTCTAGCATTATGCTTGAGGGACTCCCTTATCTCATCATTGA
ACTTCTTGCCCCATATGCTTGTTCCGCCTTTTCCAGTGCCTGTTGGGTCT
CCACCTTGAATCATAAAACCTTTAATATTCCGGTGAAAAATGGTCCCATC
ATAGTAACCACTCGCGCATAATGCCAAAAAATTCT
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