CN185472

Overview
NameCN185472
Unique NameCN185472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPID_ASHGO (Peptidyl-prolyl cis-trans isomerase D OS=Ashbya gossypii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.834e-20
Identity = 60/136 (44.12%), Postives = 80/136 (58.82%), Query Frame = -3
Query:  265 NFLALCASGY------------YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRIN 633
            NF+ LCA               Y G++FHR IKGFM Q             SI+G+KF DE   + KH+   + SMAN+GPNTNGSQ FI+ A  PHL+G + VFG VI G  V+  +E+ +T + DRPLA++RI+
Sbjct:   36 NFVRLCAGDAGECRTKPGVPLCYQGSLFHRVIKGFMCQFGDFTNGDGTGGESIYGEKFEDE-NFARKHDRPFLLSMANAGPNTNGSQCFITCAPTPHLDGKHVVFGEVIQGKRVVRAIERQET-AADRPLADVRID 169          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: CWC27_CRYNE (Peptidyl-prolyl isomerase CWC27 OS=Cryptococcus neoformans GN=CWC27 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.834e-20
Identity = 57/134 (42.54%), Postives = 75/134 (55.97%), Query Frame = -3
Query:  241 NFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXTSIWGKKFNDEIRESLKHNARGIPSMANSGP-NTNGSQFFISYAKQPHLNGLYTVFGRVIHG--FEVLDLMEKAQTGSGDRPLAEIRINRVTIHANP 633
            NFLAL   GYYDG IFHR + GF+IQ            S +G+ F DEI   LK N RG+  MAN+G  N+N SQFFI+    P L   +T+FG+++    F VL++     T   +RPL   +I R+ I  NP
Sbjct:   39 NFLALTMEGYYDGVIFHRVVPGFIIQSGDPTGTGMGGESFYGEPFEDEIHGRLKFNRRGLLGMANNGSRNSNTSQFFITLDAAPELTNKHTMFGKIVGNTIFNVLNI-GNLDTDKEERPLIPPKIRRIHIIENP 171          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.702e-20
Identity = 60/134 (44.78%), Postives = 78/134 (58.21%), Query Frame = -3
Query:  268 NFLALCA--------SG---YYDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 633
            NFL LC         SG   +Y G+ FHR IK FMIQ             SI+G  F+DE    +KH+   + SMAN GPNTNGSQFFI+    PHLN ++ VFG+V+ G EV+  +E  +T S +RPLA++ I
Sbjct:   38 NFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVI 170          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: CYP11_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizopus oryzae GN=cyp11 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.835e-20
Identity = 58/134 (43.28%), Postives = 72/134 (53.73%), Query Frame = -3
Query:  268 NFLALCASG-----------YYDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 633
            NF ALC              +Y G+IFHR IKGFM Q             SI+G  F DE   S KH+  G+ SMAN GPNT  SQFFI+    PHL+G + VFGRV+ G+ V+++ME       DRPL  + I
Sbjct:   35 NFRALCTGEKGIGKVSNMPLHYKGSIFHRIIKGFMCQGGDFTHRTGKGGESIYGANFPDE-SFSRKHDTHGLLSMANRGPNTQTSQFFITTRPTPHLDGKHVVFGRVVSGYNVVEMMENEPVDDQDRPLHNVMI 167          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.314e-20
Identity = 58/126 (46.03%), Postives = 75/126 (59.52%), Query Frame = -3
Query:  268 NFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 633
            NF ALC    G+ Y G+ FHR I+ FMIQ             S++G+ F DE    L H   G+ SMAN+GPNTNGSQFFI   K   L+G + VFG+VI G EV+ L+E+ +T  GDRP  ++ I
Sbjct:  124 NFRALCTGEKGFGYKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDE-NFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVI 248          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPID_GIBZE (Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae GN=CPR6 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.077e-19
Identity = 60/133 (45.11%), Postives = 76/133 (57.14%), Query Frame = -3
Query:  268 NFLALCA-------SG---YYDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 633
            NF +LC        SG   +Y G++FHR IK FMIQ             SI+G KF+DE    +KH    + SMAN+GPNTNGSQFFI+    PHL+G + VFG V++G  V+  +E   T SGDRP  E  I
Sbjct:   42 NFRSLCTGEKGIGKSGKPLHYKGSVFHRVIKQFMIQGGDFTAGDGTGGESIYGNKFDDEAFP-IKHEKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGEVLNGKSVVRQIENLTTQSGDRPAKEALI 173          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.077e-19
Identity = 60/133 (45.11%), Postives = 80/133 (60.15%), Query Frame = -3
Query:  268 NFLALCA-------SG---YYDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 633
            NF ALC        SG   +Y  + FHR I GFM Q             SI+G+ F DE   +LKH  +G+ SMAN+GPNTNGSQFFI++   P L+G +TVFG+++ G +VLDL+E+  + SG  P A+I I
Sbjct:   38 NFRALCTGEKGKGISGKPLHYKNSYFHRIIPGFMAQGGDFTMGDGRGGESIYGRTFKDE-NFTLKHKGKGLLSMANAGPNTNGSQFFITFVDTPWLDGNHTVFGQIVDGSKVLDLLEQHGSRSG-MPSAKIEI 168          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: SDC10_MOUSE (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Mus musculus GN=Sdccag10 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.407e-19
Identity = 51/133 (38.35%), Postives = 71/133 (53.38%), Query Frame = -3
Query:  241 NFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXTSIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGD--RPLAEIRINRVTIHANP 633
            NF+ LC   YYD TIFHR + GF++Q            SI+G  F DE    L+ N RG+ +MAN+GP+ NGSQFF +  +   LN  +T+FG+V  G  V +++   +    D  RP    RI    +  NP
Sbjct:   39 NFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGTGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLTEVDIDDEERPRNPHRIKSCEVLFNP 170          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPID_CANGA (Peptidyl-prolyl cis-trans isomerase D OS=Candida glabrata GN=CPR6 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.407e-19
Identity = 61/136 (44.85%), Postives = 80/136 (58.82%), Query Frame = -3
Query:  268 NFLALCA--SGY----------YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSG-DRPLAEIRI 633
            NFL LC   SG           Y G+IFHR IK FMIQ             SI+G+KF DE  E +KH+   + SMAN+GPNTNGSQ FI+    PHL+G + VFG VI G  ++ L+EK QT  G D+P+ ++++
Sbjct:   35 NFLKLCEGKSGMAKSKPDVPLSYKGSIFHRVIKDFMIQFGDFTNFDGTGGESIYGEKFEDENFE-IKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIEGKRLVRLIEKQQTEDGTDKPMHDVKV 169          
BLAST of CN185472 vs. ExPASy Swiss-Prot
Match: PPIB_GIBZE (Peptidyl-prolyl cis-trans isomerase B OS=Gibberella zeae GN=CPR2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.407e-19
Identity = 54/126 (42.86%), Postives = 78/126 (61.90%), Query Frame = -3
Query:  268 NFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXT-SIWGKKFNDEIRESLKHNARGIPSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 633
            NF AL     G+ Y+G+ FHR IK FMIQ             SI+G +F DE    LKH  +G+ SMAN+G +TNGSQFFI+      L+G + VFG V+ G+E+++ +E ++TG+ DRP+  ++I
Sbjct:   66 NFRALATGEKGFGYEGSAFHRVIKNFMIQGGDFTKGDGTGGKSIYGDRFKDE-NFKLKHTKKGLLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGYEIIEKIENSKTGAADRPVEAVKI 190          
The following BLAST results are available for this feature:
BLAST of CN185472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
PPID_ASHGO2.834e-2044.12Peptidyl-prolyl cis-trans isomerase D OS=Ashbya go... [more]
CWC27_CRYNE2.834e-2042.54Peptidyl-prolyl isomerase CWC27 OS=Cryptococcus ne... [more]
CYP1_BRUMA3.702e-2044.78Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
CYP11_RHIOR4.835e-2043.28Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizo... [more]
CP20B_ARATH6.314e-2046.03Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPID_GIBZE1.077e-1945.11Peptidyl-prolyl cis-trans isomerase D OS=Gibberell... [more]
CYP6_RHIOR1.077e-1945.11Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
SDC10_MOUSE1.407e-1938.35Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Mu... [more]
PPID_CANGA1.407e-1944.85Peptidyl-prolyl cis-trans isomerase D OS=Candida g... [more]
PPIB_GIBZE1.407e-1942.86Peptidyl-prolyl cis-trans isomerase B OS=Gibberell... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001G07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185472 ID=CN185472; Name=CN185472; organism=Citrus sinensis; type=EST; length=635bp
GGGGGGGGGGGGGGGGGGGCGGCGCGCCCCCTTTTTTTTTTTTCATCGTC
AATCTCACCATTTGATGCTACATAAAATTCTGCCTTTACTTCTTCCTTCA
AGCCCATAGTCATAACTGAGGAACCTTAAAATGTACAGAGTCTACTGGGA
GTTTAATCGTAAGTCACTGTTCCCACTCCACACTAAGCCTCTTTACAATG
TTATACAACAAGAAATTTTCAGACAAAGCTAGACAGCAAGGGGGTTAGCA
TGTATGGTAACTCGATTGATCCTTATCTCCGCAAGTGGCCGGTCCCCTGA
TCCAGTTTGAGCCTTTTCCATAAGGTCAAGAACTTCGAACCCATGAATTA
CTCTACCAAACACAGTGTACAATCCGTTAAGATGGGGCTGCTTTGCATAA
GAGATGAAGAATTGGCTTCCATTAGTGTTAGGGCCACTATTGGCCATTGA
CGGGATCCCTCTAGCATTATGCTTGAGGGACTCCCTTATCTCATCATTGA
ACTTCTTGCCCCATATGCTTGTTCCGCCTTTTCCAGTGCCTGTTGGGTCT
CCACCTTGAATCATAAAACCTTTAATATTCCGGTGAAAAATGGTCCCATC
ATAGTAACCACTCGCGCATAATGCCAAAAAATTCT
back to top