DC887882

Overview
NameDC887882
Unique NameDC887882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: ML12B_MOUSE (Myosin regulatory light chain 12B OS=Mus musculus GN=Myl12b PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 32/81 (39.51%), Postives = 49/81 (60.49%), Query Frame = -2
Query:  213 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F  FL +   K+   D E+ ++ AF  FD++  G I    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   83 FTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 163          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: ML12B_HUMAN (Myosin regulatory light chain 12B OS=Homo sapiens GN=MYL12B PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 32/81 (39.51%), Postives = 49/81 (60.49%), Query Frame = -2
Query:  213 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F  FL +   K+   D E+ ++ AF  FD++  G I    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   83 FTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 163          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: ML12B_BOVIN (Myosin regulatory light chain 12B OS=Bos taurus GN=MYL12B PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 32/81 (39.51%), Postives = 49/81 (60.49%), Query Frame = -2
Query:  213 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F  FL +   K+   D E+ ++ AF  FD++  G I    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   82 FTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 162          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: ML12A_PONAB (Myosin regulatory light chain 12A OS=Pongo abelii GN=MYL12A PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 32/81 (39.51%), Postives = 49/81 (60.49%), Query Frame = -2
Query:  213 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F  FL +   K+   D E+ ++ AF  FD++  G I    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   82 FTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 162          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: ML12A_HUMAN (Myosin regulatory light chain 12A OS=Homo sapiens GN=MYL12A PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 32/81 (39.51%), Postives = 49/81 (60.49%), Query Frame = -2
Query:  213 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F  FL +   K+   D E+ ++ AF  FD++  G I    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   82 FTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 162          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: TNNC1_COTJA (Troponin C, slow skeletal and cardiac muscles OS=Coturnix coturnix japonica GN=TNNC1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13
Identity = 32/84 (38.10%), Postives = 60/84 (71.43%), Query Frame = -2
Query:  213 FPEFLNLMARKMKDXD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F +FL +M R MKD     +EEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ + + DG+I+Y+EF++ M
Sbjct:   74 FDQFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGNKNNDGRIDYDEFLQFM 157          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: MYL6_CHICK (Myosin light polypeptide 6 OS=Gallus gallus GN=MYL6 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = -2
Query:  207 FPEFLNLMAR--KMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 455
            F +FL +M    K KD    E+  E  RVFDK+ NG +  AE+RHV+  LGEK+T+EEV++++   + D +G INYEE V+++++
Sbjct:   67 FEQFLPMMQTIAKNKDQGCFEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEQLVAGHE-DSNGCINYEELVRMVLS 150          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: MYL3_RAT (Myosin light chain 3 OS=Rattus norvegicus GN=Myl3 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = -2
Query:  207 FPEFLNLMAR--KMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 455
            F  FL ++    K KD  + E+  E  RVFDK+ NG +  AELRHV+  LGE+LT++EV++++   + D +G INYE FVK +MA
Sbjct:  116 FETFLPMLQHISKNKDTGTYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGERLTEDEVEKLMAGQE-DSNGCINYEAFVKHIMA 199          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: MYL3_MOUSE (Myosin light chain 3 OS=Mus musculus GN=Myl3 PE=2 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = -2
Query:  207 FPEFLNLMAR--KMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 455
            F  FL ++    K KD  + E+  E  RVFDK+ NG +  AELRHV+  LGE+LT++EV++++   + D +G INYE FVK +MA
Sbjct:  120 FETFLPMLQHISKNKDTGTYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGERLTEDEVEKLMAGQE-DSNGCINYEAFVKHIMA 203          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: MLR_PHYPO (Myosin regulatory light chain OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = -2
Query:  210 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 410
            +  +E+ +AFR  DK+ NG I  AELR ++ NLG+ LT  EV+E+++E  V GDG INYE FV +++
Sbjct:   73 EQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDMLV 139          
The following BLAST results are available for this feature:
BLAST of DC887882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
ML12B_MOUSE5.917e-1339.51Myosin regulatory light chain 12B OS=Mus musculus ... [more]
ML12B_HUMAN5.917e-1339.51Myosin regulatory light chain 12B OS=Homo sapiens ... [more]
ML12B_BOVIN5.917e-1339.51Myosin regulatory light chain 12B OS=Bos taurus GN... [more]
ML12A_PONAB5.917e-1339.51Myosin regulatory light chain 12A OS=Pongo abelii ... [more]
ML12A_HUMAN5.917e-1339.51Myosin regulatory light chain 12A OS=Homo sapiens ... [more]
TNNC1_COTJA7.728e-1338.10Troponin C, slow skeletal and cardiac muscles OS=C... [more]
MYL6_CHICK7.728e-1343.53Myosin light polypeptide 6 OS=Gallus gallus GN=MYL... [more]
MYL3_RAT7.728e-1345.88Myosin light chain 3 OS=Rattus norvegicus GN=Myl3 ... [more]
MYL3_MOUSE7.728e-1345.88Myosin light chain 3 OS=Mus musculus GN=Myl3 PE=2 ... [more]
MLR_PHYPO7.728e-1347.76Myosin regulatory light chain OS=Physarum polyceph... [more]

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Properties
Property NameValue
Genbank descriptionDC887882 EIC Citrus sinensis cDNA clone EIC1045 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887882 ID=DC887882; Name=DC887882; organism=Citrus sinensis; type=EST; length=459bp
GAGCGGAAAAAAACTAAAACATTAAAAAACTGAAAAGTTGCTCCAGTCAC
AAGACAAATTGAAGCAGGAGACAACATGCTTCCTTTAGCTTGACCTCAGA
GTTATCAAATTAAAATTTATAAAAAAGGAAACTAGGGAACCAATTATATT
AATCAACCAATTTCTTCTTTTCCCAGGAAGTTTTGGTTGGGTGGAGTCAC
TTACTTAGCCATCATAACCTTGACAAATTCCTCGTAATTTATCTGGCCAT
CACCATCGACATCAGCTTCCCTTATCATCTCATCGACTTCCTCATCAGTA
AGCTTCTCCCCTAGGTTTGTCATCACATGGCGCAGCTCAGCAGCTGAGAT
GAAACCATTCTGATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCT
CCTCAGAGTCGGNATCCTTCATCTTCCTGGCCATGAGGTTTAGGAATTCA
GGAAAAGCA
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