DC887882

Overview
NameDC887882
Unique NameDC887882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CATR_GIALA (Caltractin OS=Giardia lamblia GN=CAL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = -2
Query:  213 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F +F  +M  K+ + D  EE+ +AFR+FD D  G IS   LR V   L E ++DEE+  MI+E D DGDG+I+ E+F+ ++
Sbjct:   89 FQDFEEVMIEKISNRDPTEEILKAFRLFDDDATGRISLKNLRRVAKELSENISDEELLAMIQEFDRDGDGEIDEEDFIAIL 169          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: MYL9_RAT (Myosin regulatory light polypeptide 9 OS=Rattus norvegicus GN=Myl9 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = -2
Query:  213 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F  FL +   K+   D E+ ++ AF  FD++ +GFI    LR ++T +G++ TDEEVDEM RE  +D  G  NY EF +++
Sbjct:   83 FTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYRER-IDKKGNFNYVEFTRIL 162          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = -2
Query:  207 EFLNLMARKMKDXDS-EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 449
            EF  L A    D  + EE+L+ AFRVFD D NG ISAAEL  V+  LGEK T ++   MI   D +GDG I++EEF KVMMA
Sbjct:   96 EFAALNATASGDAAAVEEDLRHAFRVFDADGNGTISAAELARVLHGLGEKATVQQCRRMIEGVDQNGDGLISFEEF-KVMMA 176          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: MRLCA_RAT (Myosin regulatory light chain RLC-A OS=Rattus norvegicus GN=Rlc-a PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 32/81 (39.51%), Postives = 49/81 (60.49%), Query Frame = -2
Query:  213 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F  FL +   K+   D E+ ++ AF  FD++  G I    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   83 FTMFLTMFGEKLNGTDPEDVIRNAFACFDEEAIGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 163          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CML2_ARATH (Calmodulin-like protein 2 OS=Arabidopsis thaliana GN=CML2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 35/81 (43.21%), Postives = 58/81 (71.60%), Query Frame = -2
Query:  213 EFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK--LTDEEVDEMIREADVDGDGQINYEEFVKVM 449
            EF +L    +++ + EE+++EAFRVFD++ +GFI+  ELR V+ ++G K   T E+  +MI + DVDGDG +N++EF ++M
Sbjct:   61 EFGSLYQEMVEEKEEEEDMREAFRVFDQNGDGFITDEELRSVLASMGLKQGRTLEDCKKMISKVDVDGDGMVNFKEFKQMM 141          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CDPKT_ARATH (Calcium-dependent protein kinase 29 OS=Arabidopsis thaliana GN=CPK29 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = -2
Query:  213 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 410
            + EE L EAF+ FDKD++GFI+  EL+H MT  G    D  +DE+I + D D DG+INYEEFV +M
Sbjct:  457 EKEENLIEAFKYFDKDRSGFITRDELKHSMTEYGMG-DDATIDEVINDVDTDNDGRINYEEFVAMM 521          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALL6_HUMAN (Calmodulin-like protein 6 OS=Homo sapiens GN=CALML6 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = -2
Query:  213 KDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 419
            K  + E EL+ AFRVFDK+  G+I    L++V+ N GE L + E ++M++EAD DGD  I+YEEFV +M
Sbjct:  104 KAQNQESELRAAFRVFDKEGKGYIDWNTLKYVLMNAGEPLNEVEAEQMMKEADKDGDRTIDYEEFVAMM 172          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALL4_XENTR (Calmodulin-like protein 4 OS=Xenopus tropicalis GN=calml4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = -2
Query:  219 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 455
            F  FL +M R+ K  D E E+  A  + DK + G I   ELR  +T +GEKLT EEVD++++   V  DG + YEEFV+
Sbjct:   66 FSTFLTIMYRQQKQEDPENEIMVAMLMSDKQKKGVIPLKELRAKLTQMGEKLTPEEVDDLLKGVKVGPDGMVKYEEFVR 144          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CABP3_HUMAN (Calcium-binding protein 3 OS=Homo sapiens GN=CABP3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 37/86 (43.02%), Postives = 59/86 (68.60%), Query Frame = -2
Query:  213 FPEFLNLMARKMKDXDSE----EELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F +F+ LM  K+    +     +E+++AF+ FD + +G I+ AEL+  M  L GE+LT  E+ E++READV+GDG +++EEFVK+M
Sbjct:  105 FDDFVELMTPKLLAETAGMIGVQEMRDAFKEFDTNGDGEITLAELQQAMQRLLGERLTPREISEVVREADVNGDGTVDFEEFVKMM 190          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: TNNCB_HOMAM (Troponin C, isoform 2B OS=Homarus americanus PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 33/84 (39.29%), Postives = 56/84 (66.67%), Query Frame = -2
Query:  213 FPEFLNLMARKMKDXDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F EF+ L A+ + + D E    EL+EAFRV+D+  NG+I+   L+ ++  L  +LT+E++D +I E D DG G +++ EF+++M
Sbjct:   65 FEEFVELAAKFLIEEDEEALKAELREAFRVYDRGGNGYITTDVLKEILRELDNRLTEEDLDSIIEEVDEDGSGTLDFNEFMQMM 148          
The following BLAST results are available for this feature:
BLAST of DC887882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
CATR_GIALA7.728e-1343.21Caltractin OS=Giardia lamblia GN=CAL PE=3 SV=1[more]
MYL9_RAT1.009e-1240.74Myosin regulatory light polypeptide 9 OS=Rattus no... [more]
CML10_ORYSJ1.009e-1253.66Probable calcium-binding protein CML10 OS=Oryza sa... [more]
MRLCA_RAT1.318e-1239.51Myosin regulatory light chain RLC-A OS=Rattus norv... [more]
CML2_ARATH1.318e-1243.21Calmodulin-like protein 2 OS=Arabidopsis thaliana ... [more]
CDPKT_ARATH1.318e-1253.03Calcium-dependent protein kinase 29 OS=Arabidopsis... [more]
CALL6_HUMAN1.318e-1249.28Calmodulin-like protein 6 OS=Homo sapiens GN=CALML... [more]
CALL4_XENTR1.318e-1244.30Calmodulin-like protein 4 OS=Xenopus tropicalis GN... [more]
CABP3_HUMAN1.318e-1243.02Calcium-binding protein 3 OS=Homo sapiens GN=CABP3... [more]
TNNCB_HOMAM1.722e-1239.29Troponin C, isoform 2B OS=Homarus americanus PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionDC887882 EIC Citrus sinensis cDNA clone EIC1045 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887882 ID=DC887882; Name=DC887882; organism=Citrus sinensis; type=EST; length=459bp
GAGCGGAAAAAAACTAAAACATTAAAAAACTGAAAAGTTGCTCCAGTCAC
AAGACAAATTGAAGCAGGAGACAACATGCTTCCTTTAGCTTGACCTCAGA
GTTATCAAATTAAAATTTATAAAAAAGGAAACTAGGGAACCAATTATATT
AATCAACCAATTTCTTCTTTTCCCAGGAAGTTTTGGTTGGGTGGAGTCAC
TTACTTAGCCATCATAACCTTGACAAATTCCTCGTAATTTATCTGGCCAT
CACCATCGACATCAGCTTCCCTTATCATCTCATCGACTTCCTCATCAGTA
AGCTTCTCCCCTAGGTTTGTCATCACATGGCGCAGCTCAGCAGCTGAGAT
GAAACCATTCTGATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCT
CCTCAGAGTCGGNATCCTTCATCTTCCTGGCCATGAGGTTTAGGAATTCA
GGAAAAGCA
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