DC887882

Overview
NameDC887882
Unique NameDC887882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALL4_BOVIN (Calmodulin-like protein 4 OS=Bos taurus GN=CALML4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.937e-12
Identity = 31/79 (39.24%), Postives = 55/79 (69.62%), Query Frame = -2
Query:  219 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 455
            F  FL +M  ++K  D ++E+  A  + DK++ G+I A+ELR  +  LGEKLT +EV+++ REA ++ +G++ Y+EF++
Sbjct:   66 FSTFLTIMHMQIKQEDPKKEILLAMLMADKEKKGYIMASELRSKLMQLGEKLTHKEVEDLFREAGIEPNGKVKYDEFIQ 144          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CABP4_MOUSE (Calcium-binding protein 4 OS=Mus musculus GN=Cabp4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.937e-12
Identity = 38/86 (44.19%), Postives = 58/86 (67.44%), Query Frame = -2
Query:  213 FPEFLNLMARKMKDXDSE----EELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F EF+ L++ K+++  +      EL+ AFR FDKD++G I+ AELR     L GE L   E+DEM+RE D++GDG I+++EFV ++
Sbjct:  183 FEEFVELISPKLREETAHMLGVRELRIAFREFDKDRDGRITVAELRQAAPALLGEPLEGTELDEMLREMDLNGDGTIDFDEFVMML 268          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CABP4_HUMAN (Calcium-binding protein 4 OS=Homo sapiens GN=CABP4 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.937e-12
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = -2
Query:  213 FPEFLNLMARKMKDXDSE----EELKEAFRVFDKDQNGFISAAELRH-VMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F EF+ L+  K+++  +      EL+ AFR FD+D++G I+ AELR  V   LGE L   E+DEM+RE D++GDG ++++EFV ++
Sbjct:  187 FEEFVELIGPKLREETAHMLGVRELRIAFREFDRDRDGRITVAELREAVPALLGEPLAGPELDEMLREVDLNGDGTVDFDEFVMML 272          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: MYL6_RAT (Myosin light polypeptide 6 OS=Rattus norvegicus GN=Myl6 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = -2
Query:  210 FPEFLNLM--ARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 455
            F  FL ++    K KD  + E+  E  RVFDK+ NG +  AE+RHV+  LGEK+T+EEV EM+     D +G INYEE +++++
Sbjct:   67 FEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEV-EMLVAGHEDSNGCINYEELLRMVL 149          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: MYL6_PONAB (Myosin light polypeptide 6 OS=Pongo abelii GN=MYL6 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = -2
Query:  207 FPEFLNLM--ARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 455
            F  FL ++    K KD  + E+  E  RVFDK+ NG +  AE+RHV+  LGEK+T+EEV EM+     D +G INYE FV+ +++
Sbjct:   67 FEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEV-EMLVAGHEDSNGCINYEAFVRHILS 150          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: MYL6_PIG (Myosin light polypeptide 6 OS=Sus scrofa GN=MYL6 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = -2
Query:  207 FPEFLNLM--ARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 455
            F  FL ++    K KD  + E+  E  RVFDK+ NG +  AE+RHV+  LGEK+T+EEV EM+     D +G INYE FV+ +++
Sbjct:   67 FEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEV-EMLVAGHEDSNGCINYEAFVRHILS 150          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: MYL6_MOUSE (Myosin light polypeptide 6 OS=Mus musculus GN=Myl6 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = -2
Query:  207 FPEFLNLM--ARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 455
            F  FL ++    K KD  + E+  E  RVFDK+ NG +  AE+RHV+  LGEK+T+EEV EM+     D +G INYE FV+ +++
Sbjct:   67 FEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEV-EMLVAGHEDSNGCINYEAFVRHILS 150          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: MYL6_HUMAN (Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = -2
Query:  207 FPEFLNLM--ARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 455
            F  FL ++    K KD  + E+  E  RVFDK+ NG +  AE+RHV+  LGEK+T+EEV EM+     D +G INYE FV+ +++
Sbjct:   67 FEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEV-EMLVAGHEDSNGCINYEAFVRHILS 150          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: MYL6_BOVIN (Myosin light polypeptide 6 OS=Bos taurus GN=MYL6 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = -2
Query:  207 FPEFLNLM--ARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 455
            F  FL ++    K KD  + E+  E  RVFDK+ NG +  AE+RHV+  LGEK+T+EEV EM+     D +G INYE FV+ +++
Sbjct:   67 FEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEV-EMLVAGHEDSNGCINYEAFVRHILS 150          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: MLR4_SCHPO (Myosin regulatory light chain cdc4 OS=Schizosaccharomyces pombe GN=cdc4 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 32/65 (49.23%), Postives = 49/65 (75.38%), Query Frame = -2
Query:  207 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 401
            EE  + F+VFDKD  G I   ELR+V+T+LGEKL++EE+DE+++   V  DG +NY +FV++++A
Sbjct:   77 EEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQMILA 140          
The following BLAST results are available for this feature:
BLAST of DC887882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
CALL4_BOVIN2.937e-1239.24Calmodulin-like protein 4 OS=Bos taurus GN=CALML4 ... [more]
CABP4_MOUSE2.937e-1244.19Calcium-binding protein 4 OS=Mus musculus GN=Cabp4... [more]
CABP4_HUMAN2.937e-1243.02Calcium-binding protein 4 OS=Homo sapiens GN=CABP4... [more]
MYL6_RAT3.835e-1244.05Myosin light polypeptide 6 OS=Rattus norvegicus GN... [more]
MYL6_PONAB3.835e-1244.71Myosin light polypeptide 6 OS=Pongo abelii GN=MYL6... [more]
MYL6_PIG3.835e-1244.71Myosin light polypeptide 6 OS=Sus scrofa GN=MYL6 P... [more]
MYL6_MOUSE3.835e-1244.71Myosin light polypeptide 6 OS=Mus musculus GN=Myl6... [more]
MYL6_HUMAN3.835e-1244.71Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6... [more]
MYL6_BOVIN3.835e-1244.71Myosin light polypeptide 6 OS=Bos taurus GN=MYL6 P... [more]
MLR4_SCHPO3.835e-1249.23Myosin regulatory light chain cdc4 OS=Schizosaccha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887882 EIC Citrus sinensis cDNA clone EIC1045 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887882 ID=DC887882; Name=DC887882; organism=Citrus sinensis; type=EST; length=459bp
GAGCGGAAAAAAACTAAAACATTAAAAAACTGAAAAGTTGCTCCAGTCAC
AAGACAAATTGAAGCAGGAGACAACATGCTTCCTTTAGCTTGACCTCAGA
GTTATCAAATTAAAATTTATAAAAAAGGAAACTAGGGAACCAATTATATT
AATCAACCAATTTCTTCTTTTCCCAGGAAGTTTTGGTTGGGTGGAGTCAC
TTACTTAGCCATCATAACCTTGACAAATTCCTCGTAATTTATCTGGCCAT
CACCATCGACATCAGCTTCCCTTATCATCTCATCGACTTCCTCATCAGTA
AGCTTCTCCCCTAGGTTTGTCATCACATGGCGCAGCTCAGCAGCTGAGAT
GAAACCATTCTGATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCT
CCTCAGAGTCGGNATCCTTCATCTTCCTGGCCATGAGGTTTAGGAATTCA
GGAAAAGCA
back to top