DC887882

Overview
NameDC887882
Unique NameDC887882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CML27_ARATH (Probable calcium-binding protein CML27 OS=Arabidopsis thaliana GN=CML27 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = -2
Query:  213 KDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 419
            +   S  E+++AF ++D+D+NG ISA+EL  V+  LG   + E+   MI   D DGDG +N+EEF K+M
Sbjct:   85 RSSSSAAEIRDAFDLYDQDKNGLISASELHQVLNRLGMSCSVEDCTRMIGPVDADGDGNVNFEEFQKMM 153          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CABP1_RAT (Calcium-binding protein 1 OS=Rattus norvegicus GN=Cabp1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 34/86 (39.53%), Postives = 58/86 (67.44%), Query Frame = -2
Query:  213 FPEFLNLMARKM----KDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F +F+ LM  K+     D    +EL++AFR FD + +G IS +ELR  M  L G ++   +++E+IR+ D++GDG++++EEFV++M
Sbjct:  211 FDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMM 296          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CABP1_MOUSE (Calcium-binding protein 1 OS=Mus musculus GN=Cabp1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 34/86 (39.53%), Postives = 58/86 (67.44%), Query Frame = -2
Query:  213 FPEFLNLMARKM----KDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F +F+ LM  K+     D    +EL++AFR FD + +G IS +ELR  M  L G ++   +++E+IR+ D++GDG++++EEFV++M
Sbjct:  140 FDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMM 225          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CABP1_HUMAN (Calcium-binding protein 1 OS=Homo sapiens GN=CABP1 PE=1 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 34/86 (39.53%), Postives = 58/86 (67.44%), Query Frame = -2
Query:  213 FPEFLNLMARKM----KDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F +F+ LM  K+     D    +EL++AFR FD + +G IS +ELR  M  L G ++   +++E+IR+ D++GDG++++EEFV++M
Sbjct:  283 FDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMM 368          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CABP1_BOVIN (Calcium-binding protein 1 OS=Bos taurus GN=CABP1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 34/86 (39.53%), Postives = 58/86 (67.44%), Query Frame = -2
Query:  213 FPEFLNLMARKM----KDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F +F+ LM  K+     D    +EL++AFR FD + +G IS +ELR  M  L G ++   +++E+IR+ D++GDG++++EEFV++M
Sbjct:  139 FDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMM 224          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CABP4_BOVIN (Calcium-binding protein 4 OS=Bos taurus GN=CABP4 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = -2
Query:  213 FPEFLNLMARKMKDXDSE----EELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 455
            F EF+ +M  K+++  +      EL+ AFR FD+D++G I+ AELR     L GE L   E++EM++E D++GDG +++ EFV ++
Sbjct:  191 FEEFVEMMGPKLREETAHMLGLRELRIAFREFDRDRDGRITVAELREAAPALLGEPLVGPELEEMLQEVDLNGDGTVDFNEFVMML 276          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CML4_ARATH (Calmodulin-like protein 4 OS=Arabidopsis thaliana GN=CML4 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 36/81 (44.44%), Postives = 56/81 (69.14%), Query Frame = -2
Query:  213 EFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK--LTDEEVDEMIREADVDGDGQINYEEFVKVM 449
            EF +L    +++ + E ++++AF VFD+D +GFI+  EL  VMT+LG K   T E   EMI + D DGDG++NY+EF+++M
Sbjct:  107 EFESLYGSIVEEKE-EGDMRDAFNVFDQDGDGFITVEELNSVMTSLGLKQGKTLECCKEMIMQVDEDGDGRVNYKEFLQMM 186          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CML16_ARATH (Probable calcium-binding protein CML16 OS=Arabidopsis thaliana GN=CML16 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = -2
Query:  213 EFLNLMARKMKDXDSE-----EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 449
            EF  L+   + D + E     E+L E FR FD+D NG I+AAEL   M  +G  LT  E+ EM+ EAD +GDG I++ EF  +M
Sbjct:   65 EFDELVVAILPDINEEVLINQEQLMEVFRSFDRDGNGSITAAELAGSMAKMGHPLTYRELTEMMTEADSNGDGVISFNEFSHIM 148          
BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: FIMB_DICDI (Fimbrin OS=Dictyostelium discoideum GN=fimA PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = -2
Query:  213 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 398
            E K +F  FD++ +G ISA EL+ ++T  GEK+T  EV +MI+E D DG+G I+++EF++VM
Sbjct:   11 EFKASFNQFDENGDGQISALELQKILTKCGEKVTGVEVRDMIKEVDTDGNGSIDFKEFLQVM 72          
The following BLAST results are available for this feature:
BLAST of DC887882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
CML27_ARATH3.247e-1143.48Probable calcium-binding protein CML27 OS=Arabidop... [more]
CABP1_RAT3.247e-1139.53Calcium-binding protein 1 OS=Rattus norvegicus GN=... [more]
CABP1_MOUSE3.247e-1139.53Calcium-binding protein 1 OS=Mus musculus GN=Cabp1... [more]
CABP1_HUMAN3.247e-1139.53Calcium-binding protein 1 OS=Homo sapiens GN=CABP1... [more]
CABP1_BOVIN3.247e-1139.53Calcium-binding protein 1 OS=Bos taurus GN=CABP1 P... [more]
CABP4_BOVIN5.538e-1139.53Calcium-binding protein 4 OS=Bos taurus GN=CABP4 P... [more]
CML4_ARATH7.233e-1144.44Calmodulin-like protein 4 OS=Arabidopsis thaliana ... [more]
CML16_ARATH7.233e-1144.05Probable calcium-binding protein CML16 OS=Arabidop... [more]
FIMB_DICDI9.447e-1148.39Fimbrin OS=Dictyostelium discoideum GN=fimA PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887882 EIC Citrus sinensis cDNA clone EIC1045 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887882 ID=DC887882; Name=DC887882; organism=Citrus sinensis; type=EST; length=459bp
GAGCGGAAAAAAACTAAAACATTAAAAAACTGAAAAGTTGCTCCAGTCAC
AAGACAAATTGAAGCAGGAGACAACATGCTTCCTTTAGCTTGACCTCAGA
GTTATCAAATTAAAATTTATAAAAAAGGAAACTAGGGAACCAATTATATT
AATCAACCAATTTCTTCTTTTCCCAGGAAGTTTTGGTTGGGTGGAGTCAC
TTACTTAGCCATCATAACCTTGACAAATTCCTCGTAATTTATCTGGCCAT
CACCATCGACATCAGCTTCCCTTATCATCTCATCGACTTCCTCATCAGTA
AGCTTCTCCCCTAGGTTTGTCATCACATGGCGCAGCTCAGCAGCTGAGAT
GAAACCATTCTGATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCT
CCTCAGAGTCGGNATCCTTCATCTTCCTGGCCATGAGGTTTAGGAATTCA
GGAAAAGCA
back to top