DC887882 | Citrus Genome Database

Overview


Name	DC887882
Unique Name	DC887882
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	459

Libraries


Library Name	Type
EIC	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM_PLEOS (Calmodulin OS=Pleurotus ostreatus GN=CMD1 PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 1.710e-36
Identity = 72/84 (85.71%), Postives = 80/84 (95.24%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFL +MARKM+D DSEEE+KEAF+VFDKD NG+ISAAELRHVMTNLGEKLTD EVDEMIREADVDGDGQINYEEFVK+M++K
Sbjct:   66 FPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDNEVDEMIREADVDGDGQINYEEFVKMMLSK 149

HSP 2 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -2

Query:  204 MKDXDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 422
            M D  SEE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLSEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM_LOCMI (Calmodulin OS=Locusta migratoria PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.710e-36
Identity = 72/84 (85.71%), Postives = 79/84 (94.05%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFL +MARKMKD DSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149

HSP 2 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -2

Query:  204 MKDXDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 422
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM_DROME (Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.710e-36
Identity = 72/84 (85.71%), Postives = 79/84 (94.05%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFL +MARKMKD DSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149

HSP 2 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -2

Query:  204 MKDXDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 422
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM_APLCA (Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.710e-36
Identity = 72/84 (85.71%), Postives = 79/84 (94.05%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFL +MARKMKD DSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149

HSP 2 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -2

Query:  204 MKDXDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 422
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM_AGABI (Calmodulin OS=Agaricus bisporus PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.710e-36
Identity = 72/84 (85.71%), Postives = 80/84 (95.24%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFL +MARKM+D DSEEE+KEAF+VFDKD NG+ISAAELRHVMTNLGEKLTD EVDEMIREADVDGDGQINYEEFVK+M++K
Sbjct:   66 FPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDSEVDEMIREADVDGDGQINYEEFVKMMLSK 149

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALMA_HALRO (Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.710e-36
Identity = 72/84 (85.71%), Postives = 79/84 (94.05%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFL +MARKMKD DSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149

HSP 2 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -2

Query:  204 MKDXDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 422
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM1_BRALA (Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.710e-36
Identity = 72/84 (85.71%), Postives = 79/84 (94.05%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFL +MARKMKD DSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149

HSP 2 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -2

Query:  204 MKDXDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 422
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM1_BRAFL (Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.710e-36
Identity = 72/84 (85.71%), Postives = 79/84 (94.05%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFL +MARKMKD DSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149

HSP 2 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -2

Query:  204 MKDXDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 422
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM_PLECO (Calmodulin OS=Pleurotus cornucopiae GN=CMD1 PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 2.233e-36
Identity = 71/84 (84.52%), Postives = 80/84 (95.24%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFL +MARKM+D DSEEE+KEAF+VFDKD NG+ISAAELRHVMTNLGEKLTD EVDEMIREAD+DGDGQINYEEFVK+M++K
Sbjct:   66 FPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDNEVDEMIREADIDGDGQINYEEFVKMMLSK 149

HSP 2 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -2

Query:  204 MKDXDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 422
            M D  SEE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLSEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM_ELEEL (Calmodulin OS=Electrophorus electricus GN=calm PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 2.233e-36
Identity = 71/84 (84.52%), Postives = 80/84 (95.24%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFL +MA+KMKD DSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   66 FPEFLTMMAKKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

HSP 2 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -2

Query:  204 MKDXDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 422
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAKK 76

The following BLAST results are available for this feature:

BLAST of DC887882 vs. ExPASy Swiss-Prot

BLAST of DC887882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309


Match Name	E-value	Identity	Description
CALM_PLEOS	1.710e-36	85.71	Calmodulin OS=Pleurotus ostreatus GN=CMD1 PE=2 SV=...	[more]
CALM_LOCMI	1.710e-36	85.71	Calmodulin OS=Locusta migratoria PE=1 SV=2	[more]
CALM_DROME	1.710e-36	85.71	Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 ...	[more]
CALM_APLCA	1.710e-36	85.71	Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2	[more]
CALM_AGABI	1.710e-36	85.71	Calmodulin OS=Agaricus bisporus PE=1 SV=2	[more]
CALMA_HALRO	1.710e-36	85.71	Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2	[more]
CALM1_BRALA	1.710e-36	85.71	Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=...	[more]
CALM1_BRAFL	1.710e-36	85.71	Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2	[more]
CALM_PLECO	2.233e-36	84.52	Calmodulin OS=Pleurotus cornucopiae GN=CMD1 PE=1 S...	[more]
CALM_ELEEL	2.233e-36	84.52	Calmodulin OS=Electrophorus electricus GN=calm PE=...	[more]

Pages

Properties


Property Name	Value
Genbank description	DC887882 EIC Citrus sinensis cDNA clone EIC1045 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC887882 ID=DC887882; Name=DC887882; organism=Citrus sinensis; type=EST; length=459bp
GAGCGGAAAAAAACTAAAACATTAAAAAACTGAAAAGTTGCTCCAGTCAC
AAGACAAATTGAAGCAGGAGACAACATGCTTCCTTTAGCTTGACCTCAGA
GTTATCAAATTAAAATTTATAAAAAAGGAAACTAGGGAACCAATTATATT
AATCAACCAATTTCTTCTTTTCCCAGGAAGTTTTGGTTGGGTGGAGTCAC
TTACTTAGCCATCATAACCTTGACAAATTCCTCGTAATTTATCTGGCCAT
CACCATCGACATCAGCTTCCCTTATCATCTCATCGACTTCCTCATCAGTA
AGCTTCTCCCCTAGGTTTGTCATCACATGGCGCAGCTCAGCAGCTGAGAT
GAAACCATTCTGATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCT
CCTCAGAGTCGGNATCCTTCATCTTCCTGGCCATGAGGTTTAGGAATTCA
GGAAAAGCA