DC887873

Overview
NameDC887873
Unique NameDC887873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A2_TRYCR (40S ribosomal protein S3a-2 OS=Trypanosoma cruzi GN=Tc00.1047053511001.9 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 49/145 (33.79%), Postives = 83/145 (57.24%), Query Frame = -3
Query:  253 LVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY---SEDVGVKVDRPADEPMPEA 678
            L+RKW T IEA V+ KT D +TLRLF I FTK+  NQ+ + CYA+T  ++ +R ++  ++  + +  ++   V      ++   + K  + I PL+++ IRKVK+++ P+FD   L+  HG+    +E     V+   + P  EA
Sbjct:  115 LLRKWCTTIEAAVEAKTADGYTLRLFVIAFTKKQSNQLSKNCYAKTRLVKWVRHRITNLIRQRLSKVNINEAVTLLTRNILRDRLAKRCNPIVPLRDLRIRKVKVVRTPRFDAQALLNAHGEIPASAEGEARVVEEAQEAPAAEA 259          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A1_TRYCR (40S ribosomal protein S3a-1 OS=Trypanosoma cruzi GN=Tc00.1047053503635.59 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 49/145 (33.79%), Postives = 83/145 (57.24%), Query Frame = -3
Query:  253 LVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY---SEDVGVKVDRPADEPMPEA 678
            L+RKW T IEA V+ KT D +TLRLF I FTK+  NQ+ + CYA+T  ++ +R ++  ++  + +  ++   V      ++   + K  + I PL+++ IRKVK+++ P+FD   L+  HG+    +E     V+   + P  EA
Sbjct:  115 LLRKWCTTIEAAVETKTADGYTLRLFVIAFTKKQSNQLSKNCYAKTRLVKWVRHRITNLIRQRLSKVNINEAVTLLTRNILRDRLAKRCNPIVPLRDLRIRKVKVVRTPRFDAQALLNAHGEIPASAEGEARVVEEAQEAPAAEA 259          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_LEIMA (40S ribosomal protein S3a OS=Leishmania major GN=LmjF35.0400 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = -3
Query:  250 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAP 681
            SL+RKW T +E  V+VKT D +T+RLF + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      V+   + +  + I PL+ + IRKV++++ PKFD   L+  HG     V     R  +E +  AP
Sbjct:  115 SLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAHGTIPASVEAD-QREVEEAVEAAP 257          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A2_LEIIN (40S ribosomal protein S3a-2 OS=Leishmania infantum GN=LinJ35.0510 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = -3
Query:  250 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAP 681
            SL+RKW T +E  V+VKT D +T+RLF + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      V+   + +  + I PL+ + IRKV++++ PKFD   L+  HG     V     R  +E +  AP
Sbjct:  115 SLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAHGTIPASVEAD-QREVEEAVEAAP 257          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A1_LEIIN (40S ribosomal protein S3a-1 OS=Leishmania infantum GN=LinJ35.0500 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = -3
Query:  250 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAP 681
            SL+RKW T +E  V+VKT D +T+RLF + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      V+   + +  + I PL+ + IRKV++++ PKFD   L+  HG     V     R  +E +  AP
Sbjct:  115 SLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAHGTIPASVEAD-QREVEEAVEAAP 257          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_LEIBR (40S ribosomal protein S3a OS=Leishmania braziliensis GN=LbrM34_V2.0430 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 47/144 (32.64%), Postives = 79/144 (54.86%), Query Frame = -3
Query:  250 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAP 681
            SL+RKW T +E  V+V+T D +T+RLF + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      V+   + +  + I PL+ + IRKV++++ PKFD   L+  HG     V     R  +E +  AP
Sbjct:  115 SLLRKWCTTMETTVEVRTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRVTKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPIVPLREMRIRKVRVVRTPKFDAQALLNAHGTIPTSVEAD-PREVEEAVEAAP 257          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_NOSCE (40S ribosomal protein S1 OS=Nosema ceranae (strain BRL01) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = -3
Query:  313 LVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 678
            ++RKWHTLIEA  D+   D   LR+F    TK+ P    +  Y +TS+ ++IR+ M +++  +    DL  +++K  AEVIG+ +EK  S IYPLQN  + KVK +K  K D    ME+  +
Sbjct:  115 IIRKWHTLIEAEKDIVAKDGTILRVFVNAVTKKTPTCTSKRVYCKTSEEKKIRKVMFDVIEEELKGEDLNKIMKKLAAEVIGKSVEKKGSLIYPLQNCCVIKVKTVKRGK-DTSNAMEIEAN 235          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_GUITH (40S ribosomal protein S3a OS=Guillardia theta PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16
Identity = 40/108 (37.04%), Postives = 68/108 (62.96%), Query Frame = -3
Query:  358 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILK 681
            SL++KWHTLIE  V+ KT D + L+LF I  +K+  N   +T Y  +SQ R +RR++ +I++ +  + D+K  + +  +  I  +IE   S I+P+  V IRK+K+++
Sbjct:  108 SLIKKWHTLIEVEVNFKTKDGYFLKLFLIAQSKKPKNMKSKTVYINSSQKRALRRRITDIIIKEGINMDIKDFIHRIYSLKIYEKIEINCSKIFPIHQVNIRKIKVVE 215          
The following BLAST results are available for this feature:
BLAST of DC887873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RS3A2_TRYCR3.250e-2033.7940S ribosomal protein S3a-2 OS=Trypanosoma cruzi G... [more]
RS3A1_TRYCR3.250e-2033.7940S ribosomal protein S3a-1 OS=Trypanosoma cruzi G... [more]
RS3A_LEIMA4.693e-1933.3340S ribosomal protein S3a OS=Leishmania major GN=L... [more]
RS3A2_LEIIN4.693e-1933.3340S ribosomal protein S3a-2 OS=Leishmania infantum... [more]
RS3A1_LEIIN4.693e-1933.3340S ribosomal protein S3a-1 OS=Leishmania infantum... [more]
RS3A_LEIBR1.366e-1832.6440S ribosomal protein S3a OS=Leishmania braziliens... [more]
RS3A_NOSCE2.329e-1839.3440S ribosomal protein S1 OS=Nosema ceranae (strain... [more]
RS3A_GUITH2.847e-1637.0440S ribosomal protein S3a OS=Guillardia theta PE=3... [more]

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Properties
Property NameValue
Genbank descriptionDC887873 EIC Citrus sinensis cDNA clone EIC1031 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887873 ID=DC887873; Name=DC887873; organism=Citrus sinensis; type=EST; length=683bp
TGTCTTTATTTGACGAATTTTGGATAATGTCATGATCTAGTCCACTAGAA
TAAAGCAAGAAGAAAGCACATGTTCTTACCATAGAAACAACAGTAACCAT
CTCAGCTAGAATATTTAAAATCTGCAAACAACTTGAAACATTCATATATG
ATGAATTCATAACAAACAAAACTGCCCAGATCAGAATAGTAGTGAAAAAC
AAAACTAGAAAAATTTCTTCATTCACGTTCAAGCTCCAATCACTTCAGTT
GGTGCTTCAGGCATGGGCTCATCAGCTGGCCTATCCACCTTCACACCAAC
ATCTTCCGAGTAATCACCGTGAACCTCCATCAATTTTCCAAGATCAAACT
TGGGAGCTTTCAGGATCTTCACTTTGCGAATGAACACATTTTGTAAGGGG
TATATGCTTGACGTTGCCTTCTCAATCTCTCTTCCAATCACTTCAGCAAT
GAACTTTTCGACCAAGCTCTTAAGATCACAAGATGCTGCCTGAGCAACCA
TGATCTCCCTCATCTTGCGGCGAATCTGTCTAATCTGGCTGGTCTGTGCG
TAGCAAGTCCTCTTAACCTGGTTTGGAAGTCTCTTGGTGAATCCAATGCA
GAACAATCTCAATGTGAAGTTATCAGTGGTCTTGACATCCACGTAAGCTT
CAATCAAGGTATGCCACTTCCTAACCAAAGACC
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