DC887873

Overview
NameDC887873
Unique NameDC887873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_YARLI (40S ribosomal protein S1 OS=Yarrowia lipolytica GN=RPS1 PE=3 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.661e-43
Identity = 89/134 (66.42%), Postives = 107/134 (79.85%), Query Frame = -3
Query:  280 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDR 681
            SLVRKW TLIEA V VKT+D++ LRLF IGFTKR  NQVK+T YAQTSQI QIR+KM +I+V +A++  L  L  K I EVIGREIEKAT +IYPLQNV+IRKVK+LK PKFDLG L+ +HG  ++D G KV+R
Sbjct:  112 SLVRKWQTLIEANVTVKTSDDYFLRLFVIGFTKRQANQVKKTTYAQTSQINQIRKKMTDIVVREASNVTLAQLTAKLIPEVIGREIEKATQNIYPLQNVYIRKVKLLKQPKFDLGALLALHGGATDDNGKKVNR 245          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_EMENI (40S ribosomal protein S1 OS=Emericella nidulans GN=rps1 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.661e-43
Identity = 90/144 (62.50%), Postives = 111/144 (77.08%), Query Frame = -3
Query:  253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRPADEPMPEA 681
            SLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +A+SC L  L  K I EVIGREIEKAT  IYPLQ+V IRKVK+LK+PKFDLG L+ +HG+  ++D G KV+R   E + E+
Sbjct:  112 SLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREASSCSLAQLTSKLIPEVIGREIEKATQGIYPLQHVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGQKVEREFKEQVLES 255          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_TALSN (40S ribosomal protein S1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=rps1 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.087e-43
Identity = 90/144 (62.50%), Postives = 111/144 (77.08%), Query Frame = -3
Query:  253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRPADEPMPEA 681
            SLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EI+  +AASC L  L  K I EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G KV+R   E + E+
Sbjct:  112 SLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDQGHKVEREFKETVLES 255          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_NECH7 (40S ribosomal protein S1 OS=Nectria haematococca (strain 77-13-4 / FGSC 9596 / MPVI) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.038e-42
Identity = 90/143 (62.94%), Postives = 109/143 (76.22%), Query Frame = -3
Query:  256 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDRPADEPMPE 681
            SLVRKW TLIEA V VKTTD++ +RLF I FTKR PNQ+K+T YA +SQIR IRRKM +I+  +A+SC L  L  K I EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG LM +HG+  ++D G KV+R   E + E
Sbjct:  112 SLVRKWQTLIEANVTVKTTDDYLIRLFAIAFTKRRPNQIKKTTYAASSQIRAIRRKMTDIIQREASSCTLTQLTSKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALMALHGESGTDDQGQKVEREFKERVLE 254          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_PENMQ (40S ribosomal protein S1 OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=rps1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.356e-42
Identity = 90/144 (62.50%), Postives = 110/144 (76.39%), Query Frame = -3
Query:  253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRPADEPMPEA 681
            SLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +AASC L  L  K I EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G KV+R   E + E+
Sbjct:  112 SLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAGSSQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDQGHKVEREFKETVLES 255          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_PLAVI (40S ribosomal protein S3a OS=Plasmodium vivax GN=PVX_095080 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.313e-42
Identity = 85/132 (64.39%), Postives = 101/132 (76.52%), Query Frame = -3
Query:  286 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 681
            SL+RK +TLIE Y DVKT DN+ LR+FCI FTK+ PNQ K TCYAQTSQI++IR+KM +IM A+A+   LK LV+KFI E IG+E+EK    IYPLQNV IRKVKILK PK D+ KLME+H D  ED G  V
Sbjct:  112 SLIRKGYTLIEGYTDVKTIDNYQLRMFCIAFTKKRPNQTKTTCYAQTSQIKKIRKKMVDIMNAEASKVMLKDLVKKFIPESIGKEVEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDSKEDAGKNV 243          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_NANOT (40S ribosomal protein S1 OS=Nannizzia otae (strain CBS 113480) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.313e-42
Identity = 91/144 (63.19%), Postives = 111/144 (77.08%), Query Frame = -3
Query:  253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 681
            SLVRKW TLIEA V VKTTD++ +RLF I FTKR PNQ+K+T YAQ+SQIR IR+KM EI+  QA+SC L  L  K + EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R   E + E+
Sbjct:  112 SLVRKWQTLIEANVTVKTTDDYLVRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRKKMTEIIQRQASSCTLTQLT-KLVPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLALHGEASTDDKGQKVEREFKEKVLES 254          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_PLAKH (40S ribosomal protein S3a OS=Plasmodium knowlesi (strain H) GN=PKH_081740 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.021e-42
Identity = 85/132 (64.39%), Postives = 101/132 (76.52%), Query Frame = -3
Query:  286 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 681
            SL+RK +TLIE Y DVKT DN+ LR+FCI FTK+ PNQ K TCYAQTSQI++IR+KM +IM A+A+   LK LV+KFI E IG+E+EK    IYPLQNV IRKVKILK PK D+ KLME+H D  ED G  V
Sbjct:  112 SLIRKGYTLIEGYTDVKTIDNYQLRMFCIAFTKKRPNQTKTTCYAQTSQIKKIRKKMVDIMNAEASKVLLKDLVKKFIPESIGKEVEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDSKEDAGKNV 243          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_PENCW (40S ribosomal protein S1 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=rps1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.021e-42
Identity = 87/144 (60.42%), Postives = 111/144 (77.08%), Query Frame = -3
Query:  253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRPADEPMPEA 681
            SLVRKW +LIEA + VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EI+  +A++C L  L  K I EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G KV+R   E + E+
Sbjct:  112 SLVRKWQSLIEANITVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIIQREASTCTLSQLTHKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESATDDKGQKVEREFKETVLES 255          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_SCLS1 (40S ribosomal protein S1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rps1 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.946e-42
Identity = 89/143 (62.24%), Postives = 108/143 (75.52%), Query Frame = -3
Query:  256 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKVDRPADEPMPE 681
            SLVRKW +LIEA + VKTTD++ LRLF I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +A++C L  L  K I EVIGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+ + D  G KV+R   E + E
Sbjct:  112 SLVRKWQSLIEANITVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASTCTLTQLTAKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESNTDEQGQKVEREFKEKVLE 254          
The following BLAST results are available for this feature:
BLAST of DC887873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RS3A_YARLI4.661e-4366.4240S ribosomal protein S1 OS=Yarrowia lipolytica GN... [more]
RS3A_EMENI4.661e-4362.5040S ribosomal protein S1 OS=Emericella nidulans GN... [more]
RS3A_TALSN6.087e-4362.5040S ribosomal protein S1 OS=Talaromyces stipitatus... [more]
RS3A_NECH71.038e-4262.9440S ribosomal protein S1 OS=Nectria haematococca (... [more]
RS3A_PENMQ1.356e-4262.5040S ribosomal protein S1 OS=Penicillium marneffei ... [more]
RS3A_PLAVI2.313e-4264.3940S ribosomal protein S3a OS=Plasmodium vivax GN=P... [more]
RS3A_NANOT2.313e-4263.1940S ribosomal protein S1 OS=Nannizzia otae (strain... [more]
RS3A_PLAKH3.021e-4264.3940S ribosomal protein S3a OS=Plasmodium knowlesi (... [more]
RS3A_PENCW3.021e-4260.4240S ribosomal protein S1 OS=Penicillium chrysogenu... [more]
RS3A_SCLS13.946e-4262.2440S ribosomal protein S1 OS=Sclerotinia sclerotior... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887873 EIC Citrus sinensis cDNA clone EIC1031 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887873 ID=DC887873; Name=DC887873; organism=Citrus sinensis; type=EST; length=683bp
TGTCTTTATTTGACGAATTTTGGATAATGTCATGATCTAGTCCACTAGAA
TAAAGCAAGAAGAAAGCACATGTTCTTACCATAGAAACAACAGTAACCAT
CTCAGCTAGAATATTTAAAATCTGCAAACAACTTGAAACATTCATATATG
ATGAATTCATAACAAACAAAACTGCCCAGATCAGAATAGTAGTGAAAAAC
AAAACTAGAAAAATTTCTTCATTCACGTTCAAGCTCCAATCACTTCAGTT
GGTGCTTCAGGCATGGGCTCATCAGCTGGCCTATCCACCTTCACACCAAC
ATCTTCCGAGTAATCACCGTGAACCTCCATCAATTTTCCAAGATCAAACT
TGGGAGCTTTCAGGATCTTCACTTTGCGAATGAACACATTTTGTAAGGGG
TATATGCTTGACGTTGCCTTCTCAATCTCTCTTCCAATCACTTCAGCAAT
GAACTTTTCGACCAAGCTCTTAAGATCACAAGATGCTGCCTGAGCAACCA
TGATCTCCCTCATCTTGCGGCGAATCTGTCTAATCTGGCTGGTCTGTGCG
TAGCAAGTCCTCTTAACCTGGTTTGGAAGTCTCTTGGTGAATCCAATGCA
GAACAATCTCAATGTGAAGTTATCAGTGGTCTTGACATCCACGTAAGCTT
CAATCAAGGTATGCCACTTCCTAACCAAAGACC
back to top