DC887873
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3) HSP 1 Score: 167.548 bits (423), Expect = 5.697e-41 Identity = 80/141 (56.74%), Postives = 108/141 (76.60%), Query Frame = -3 Query: 280 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKVDR 681 S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG+++EKA SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S ++ G KV+R Sbjct: 112 SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_SOLSE (40S ribosomal protein S3a OS=Solea senegalensis GN=rps3a PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 7.441e-41 Identity = 79/143 (55.24%), Postives = 107/143 (74.83%), Query Frame = -3 Query: 280 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKVDR 681 S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + +G++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ +D G KV+R Sbjct: 112 SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGTGTATKATGDDTGAKVER 254
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_ORYLA (40S ribosomal protein S3a OS=Oryzias latipes GN=rps3a PE=2 SV=3) HSP 1 Score: 167.162 bits (422), Expect = 7.441e-41 Identity = 80/143 (55.94%), Postives = 107/143 (74.83%), Query Frame = -3 Query: 280 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKVDR 681 S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+ NQV++T YAQ Q+RQIR+KM EIM + + DLK +V K I + +G++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ +D G KV+R Sbjct: 112 SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVER 254
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_PARBP (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain Pb03) GN=RPS1 PE=3 SV=2) HSP 1 Score: 166.777 bits (421), Expect = 9.718e-41 Identity = 91/144 (63.19%), Postives = 109/144 (75.69%), Query Frame = -3 Query: 253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 681 SLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YAQ+SQIR IR+KM EI+ +A + L L K I EVIGREIEKAT IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R E + E+ Sbjct: 112 SLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRKKMVEIIQREAGTRSLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKETVLES 254
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_PARBD (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain Pb18) GN=RPS1 PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 9.718e-41 Identity = 91/144 (63.19%), Postives = 109/144 (75.69%), Query Frame = -3 Query: 253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 681 SLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YAQ+SQIR IR+KM EI+ +A + L L K I EVIGREIEKAT IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R E + E+ Sbjct: 112 SLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRKKMVEIIQREAGTRSLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKETVLES 254
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_PARBA (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=RPS1 PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 9.718e-41 Identity = 91/144 (63.19%), Postives = 109/144 (75.69%), Query Frame = -3 Query: 253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 681 SLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YAQ+SQIR IR+KM EI+ +A + L L K I EVIGREIEKAT IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R E + E+ Sbjct: 112 SLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRKKMVEIIQREAGTRSLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKETVLES 254
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_NEMVE (40S ribosomal protein S3a OS=Nematostella vectensis GN=v1g242621 PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 9.718e-41 Identity = 82/147 (55.78%), Postives = 109/147 (74.15%), Query Frame = -3 Query: 265 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS--------EDVGVKVDRPADEP 681 SLV+KW TLIEA VDVKTTD + LR+FCIGFTKR NQ+K+T YA+ +QI+ IR+KM +I+ + ++ DLK +V K I + IG++IEK+ SIYPL +V IRKVK+LK PKFD+GKLME+HG+ S ++ G K+DR EP Sbjct: 111 SLVKKWQTLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGEASSHATTTTTDETGTKIDREGFEP 257
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_MALGO (40S ribosomal protein S1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS1 PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 9.718e-41 Identity = 84/148 (56.76%), Postives = 111/148 (75.00%), Query Frame = -3 Query: 253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS----EDVGVKV-DRPADEPMPEA 681 SLVRKW +LIEA+ D++TTD + LR+F IGFT+R NQVK+T YA++SQI IR+KM E++ +++SCDL+ V K I EV+GREIEK+T IYPL++VFI KVK+LK PKFD+ KL E+HG S EDVG K+ EP+P+A Sbjct: 111 SLVRKWQSLIEAHQDIRTTDGYLLRVFAIGFTRRRANQVKKTTYAKSSQIHAIRKKMFEVIQRESSSCDLREFVAKLIPEVMGREIEKSTQGIYPLKDVFIHKVKVLKRPKFDVNKLYELHGGASVVGAEDVGTKIKSGEFKEPVPQA 258
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_XENTR (40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3) HSP 1 Score: 166.392 bits (420), Expect = 1.269e-40 Identity = 79/141 (56.03%), Postives = 107/141 (75.89%), Query Frame = -3 Query: 280 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 681 S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ ++ G KV+R Sbjct: 112 SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVER 252
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_TAEGU (40S ribosomal protein S3a OS=Taeniopygia guttata GN=RPS3A PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.269e-40 Identity = 79/141 (56.03%), Postives = 107/141 (75.89%), Query Frame = -3 Query: 280 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 681 S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ ++ G KV+R Sbjct: 112 SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGTKVER 252 The following BLAST results are available for this feature:
BLAST of DC887873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 158
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887873 ID=DC887873; Name=DC887873; organism=Citrus sinensis; type=EST; length=683bpback to top |