DC887873

Overview
NameDC887873
Unique NameDC887873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 5.697e-41
Identity = 80/141 (56.74%), Postives = 108/141 (76.60%), Query Frame = -3
Query:  280 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKVDR 681
            S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG+++EKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G KV+R
Sbjct:  112 SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_SOLSE (40S ribosomal protein S3a OS=Solea senegalensis GN=rps3a PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.441e-41
Identity = 79/143 (55.24%), Postives = 107/143 (74.83%), Query Frame = -3
Query:  280 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKVDR 681
            S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           +D G KV+R
Sbjct:  112 SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGTGTATKATGDDTGAKVER 254          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_ORYLA (40S ribosomal protein S3a OS=Oryzias latipes GN=rps3a PE=2 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 7.441e-41
Identity = 80/143 (55.94%), Postives = 107/143 (74.83%), Query Frame = -3
Query:  280 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKVDR 681
            S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQV++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           +D G KV+R
Sbjct:  112 SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVER 254          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_PARBP (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain Pb03) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 9.718e-41
Identity = 91/144 (63.19%), Postives = 109/144 (75.69%), Query Frame = -3
Query:  253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 681
            SLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YAQ+SQIR IR+KM EI+  +A +  L  L  K I EVIGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R   E + E+
Sbjct:  112 SLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRKKMVEIIQREAGTRSLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKETVLES 254          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_PARBD (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain Pb18) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.718e-41
Identity = 91/144 (63.19%), Postives = 109/144 (75.69%), Query Frame = -3
Query:  253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 681
            SLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YAQ+SQIR IR+KM EI+  +A +  L  L  K I EVIGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R   E + E+
Sbjct:  112 SLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRKKMVEIIQREAGTRSLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKETVLES 254          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_PARBA (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.718e-41
Identity = 91/144 (63.19%), Postives = 109/144 (75.69%), Query Frame = -3
Query:  253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 681
            SLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YAQ+SQIR IR+KM EI+  +A +  L  L  K I EVIGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R   E + E+
Sbjct:  112 SLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRKKMVEIIQREAGTRSLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKETVLES 254          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_NEMVE (40S ribosomal protein S3a OS=Nematostella vectensis GN=v1g242621 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.718e-41
Identity = 82/147 (55.78%), Postives = 109/147 (74.15%), Query Frame = -3
Query:  265 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS--------EDVGVKVDRPADEP 681
            SLV+KW TLIEA VDVKTTD + LR+FCIGFTKR  NQ+K+T YA+ +QI+ IR+KM +I+  + ++ DLK +V K I + IG++IEK+  SIYPL +V IRKVK+LK PKFD+GKLME+HG+ S        ++ G K+DR   EP
Sbjct:  111 SLVKKWQTLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGEASSHATTTTTDETGTKIDREGFEP 257          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_MALGO (40S ribosomal protein S1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.718e-41
Identity = 84/148 (56.76%), Postives = 111/148 (75.00%), Query Frame = -3
Query:  253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS----EDVGVKV-DRPADEPMPEA 681
            SLVRKW +LIEA+ D++TTD + LR+F IGFT+R  NQVK+T YA++SQI  IR+KM E++  +++SCDL+  V K I EV+GREIEK+T  IYPL++VFI KVK+LK PKFD+ KL E+HG  S    EDVG K+      EP+P+A
Sbjct:  111 SLVRKWQSLIEAHQDIRTTDGYLLRVFAIGFTRRRANQVKKTTYAKSSQIHAIRKKMFEVIQRESSSCDLREFVAKLIPEVMGREIEKSTQGIYPLKDVFIHKVKVLKRPKFDVNKLYELHGGASVVGAEDVGTKIKSGEFKEPVPQA 258          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_XENTR (40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.269e-40
Identity = 79/141 (56.03%), Postives = 107/141 (75.89%), Query Frame = -3
Query:  280 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 681
            S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G KV+R
Sbjct:  112 SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVER 252          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_TAEGU (40S ribosomal protein S3a OS=Taeniopygia guttata GN=RPS3A PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.269e-40
Identity = 79/141 (56.03%), Postives = 107/141 (75.89%), Query Frame = -3
Query:  280 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 681
            S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G KV+R
Sbjct:  112 SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGTKVER 252          
The following BLAST results are available for this feature:
BLAST of DC887873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RS3A_GECJA5.697e-4156.7440S ribosomal protein S3a OS=Gecko japonicus GN=RP... [more]
RS3A_SOLSE7.441e-4155.2440S ribosomal protein S3a OS=Solea senegalensis GN... [more]
RS3A_ORYLA7.441e-4155.9440S ribosomal protein S3a OS=Oryzias latipes GN=rp... [more]
RS3A_PARBP9.718e-4163.1940S ribosomal protein S1 OS=Paracoccidioides brasi... [more]
RS3A_PARBD9.718e-4163.1940S ribosomal protein S1 OS=Paracoccidioides brasi... [more]
RS3A_PARBA9.718e-4163.1940S ribosomal protein S1 OS=Paracoccidioides brasi... [more]
RS3A_NEMVE9.718e-4155.7840S ribosomal protein S3a OS=Nematostella vectensi... [more]
RS3A_MALGO9.718e-4156.7640S ribosomal protein S1 OS=Malassezia globosa (st... [more]
RS3A_XENTR1.269e-4056.0340S ribosomal protein S3a OS=Xenopus tropicalis GN... [more]
RS3A_TAEGU1.269e-4056.0340S ribosomal protein S3a OS=Taeniopygia guttata G... [more]

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Properties
Property NameValue
Genbank descriptionDC887873 EIC Citrus sinensis cDNA clone EIC1031 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887873 ID=DC887873; Name=DC887873; organism=Citrus sinensis; type=EST; length=683bp
TGTCTTTATTTGACGAATTTTGGATAATGTCATGATCTAGTCCACTAGAA
TAAAGCAAGAAGAAAGCACATGTTCTTACCATAGAAACAACAGTAACCAT
CTCAGCTAGAATATTTAAAATCTGCAAACAACTTGAAACATTCATATATG
ATGAATTCATAACAAACAAAACTGCCCAGATCAGAATAGTAGTGAAAAAC
AAAACTAGAAAAATTTCTTCATTCACGTTCAAGCTCCAATCACTTCAGTT
GGTGCTTCAGGCATGGGCTCATCAGCTGGCCTATCCACCTTCACACCAAC
ATCTTCCGAGTAATCACCGTGAACCTCCATCAATTTTCCAAGATCAAACT
TGGGAGCTTTCAGGATCTTCACTTTGCGAATGAACACATTTTGTAAGGGG
TATATGCTTGACGTTGCCTTCTCAATCTCTCTTCCAATCACTTCAGCAAT
GAACTTTTCGACCAAGCTCTTAAGATCACAAGATGCTGCCTGAGCAACCA
TGATCTCCCTCATCTTGCGGCGAATCTGTCTAATCTGGCTGGTCTGTGCG
TAGCAAGTCCTCTTAACCTGGTTTGGAAGTCTCTTGGTGAATCCAATGCA
GAACAATCTCAATGTGAAGTTATCAGTGGTCTTGACATCCACGTAAGCTT
CAATCAAGGTATGCCACTTCCTAACCAAAGACC
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