DC887873

Overview
NameDC887873
Unique NameDC887873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDS (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain SLH14081) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.823e-40
Identity = 89/144 (61.81%), Postives = 110/144 (76.39%), Query Frame = -3
Query:  253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 681
            SLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I EVIGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R   E + E+
Sbjct:  112 SLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDR (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain ER-3) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.823e-40
Identity = 89/144 (61.81%), Postives = 110/144 (76.39%), Query Frame = -3
Query:  253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 681
            SLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I EVIGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R   E + E+
Sbjct:  112 SLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_AJECN (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.823e-40
Identity = 89/144 (61.81%), Postives = 110/144 (76.39%), Query Frame = -3
Query:  253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 681
            SLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A+S  L  L  K I EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R   E + E+
Sbjct:  112 SLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASSRTLAQLT-KLIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3AB_XENLA (40S ribosomal protein S3a-B OS=Xenopus laevis GN=rps3a-B PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.823e-40
Identity = 79/141 (56.03%), Postives = 107/141 (75.89%), Query Frame = -3
Query:  280 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 681
            S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V+ RKVK+LK PKF+LGKLME+HG+        +++ G KV+R
Sbjct:  112 SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMSREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYARKVKMLKKPKFELGKLMELHGEGGGSGKPAADETGAKVER 252          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_PLAYO (40S ribosomal protein S3a OS=Plasmodium yoelii yoelii GN=PY02291 PE=3 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 8.227e-40
Identity = 82/132 (62.12%), Postives = 99/132 (75.00%), Query Frame = -3
Query:  286 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 681
            SL+RK +TLIE   DVKT DN+ LR+FCI FTK+ PNQ K TCYAQTSQI++IR+KM +IM A+A+   LK LV+K I E IG+E+EK    I+PLQNV IRKVKILK PK D+ KLME+H D  ED G  V
Sbjct:  112 SLIRKGYTLIEGCTDVKTIDNYHLRMFCIAFTKKRPNQTKTTCYAQTSQIKKIRKKMVDIMHAEASKVLLKDLVKKIIPESIGKEVEKQCKKIFPLQNVLIRKVKILKRPKLDISKLMELHSDPKEDSGKNV 243          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_SUBDO (40S ribosomal protein S3a OS=Suberites domuncula PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.074e-39
Identity = 75/123 (60.98%), Postives = 98/123 (79.67%), Query Frame = -3
Query:  313 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 681
            +LV+KW TLIEA VDVKTTD + LRLFCIGFTKR PNQ+K+T YA++SQ R IR+KM ++M  + +  DLK  V K I + IG++IEK   SIYPL +VF+RKVK+LK PKFD+G+LM++HG+
Sbjct:  111 ALVKKWQTLIEANVDVKTTDGYLLRLFCIGFTKRQPNQIKKTSYAKSSQCRSIRKKMVDVMTREVSQIDLKETVNKLIPDSIGKDIEKKCQSIYPLHDVFVRKVKVLKKPKFDIGRLMDLHGE 233          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_AJECG (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.074e-39
Identity = 88/144 (61.11%), Postives = 110/144 (76.39%), Query Frame = -3
Query:  253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 681
            SLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R   E + E+
Sbjct:  112 SLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_CANDC (40S ribosomal protein S1 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.403e-39
Identity = 80/133 (60.15%), Postives = 105/133 (78.95%), Query Frame = -3
Query:  286 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 681
            SLVRKW +L+EA V VKT+D++ LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:  112 SLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_CANAW (40S ribosomal protein S1 OS=Candida albicans (strain WO-1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.403e-39
Identity = 80/133 (60.15%), Postives = 105/133 (78.95%), Query Frame = -3
Query:  286 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 681
            SLVRKW +L+EA V VKT+D++ LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:  112 SLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_CANAL (40S ribosomal protein S1 OS=Candida albicans GN=RPS1 PE=3 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 1.403e-39
Identity = 80/133 (60.15%), Postives = 105/133 (78.95%), Query Frame = -3
Query:  286 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 681
            SLVRKW +L+EA V VKT+D++ LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:  112 SLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
The following BLAST results are available for this feature:
BLAST of DC887873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RS3A_AJEDS4.823e-4061.8140S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A_AJEDR4.823e-4061.8140S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A_AJECN4.823e-4061.8140S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3AB_XENLA4.823e-4056.0340S ribosomal protein S3a-B OS=Xenopus laevis GN=r... [more]
RS3A_PLAYO8.227e-4062.1240S ribosomal protein S3a OS=Plasmodium yoelii yoe... [more]
RS3A_SUBDO1.074e-3960.9840S ribosomal protein S3a OS=Suberites domuncula P... [more]
RS3A_AJECG1.074e-3961.1140S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_CANDC1.403e-3960.1540S ribosomal protein S1 OS=Candida dubliniensis (... [more]
RS3A_CANAW1.403e-3960.1540S ribosomal protein S1 OS=Candida albicans (stra... [more]
RS3A_CANAL1.403e-3960.1540S ribosomal protein S1 OS=Candida albicans GN=RP... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887873 EIC Citrus sinensis cDNA clone EIC1031 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887873 ID=DC887873; Name=DC887873; organism=Citrus sinensis; type=EST; length=683bp
TGTCTTTATTTGACGAATTTTGGATAATGTCATGATCTAGTCCACTAGAA
TAAAGCAAGAAGAAAGCACATGTTCTTACCATAGAAACAACAGTAACCAT
CTCAGCTAGAATATTTAAAATCTGCAAACAACTTGAAACATTCATATATG
ATGAATTCATAACAAACAAAACTGCCCAGATCAGAATAGTAGTGAAAAAC
AAAACTAGAAAAATTTCTTCATTCACGTTCAAGCTCCAATCACTTCAGTT
GGTGCTTCAGGCATGGGCTCATCAGCTGGCCTATCCACCTTCACACCAAC
ATCTTCCGAGTAATCACCGTGAACCTCCATCAATTTTCCAAGATCAAACT
TGGGAGCTTTCAGGATCTTCACTTTGCGAATGAACACATTTTGTAAGGGG
TATATGCTTGACGTTGCCTTCTCAATCTCTCTTCCAATCACTTCAGCAAT
GAACTTTTCGACCAAGCTCTTAAGATCACAAGATGCTGCCTGAGCAACCA
TGATCTCCCTCATCTTGCGGCGAATCTGTCTAATCTGGCTGGTCTGTGCG
TAGCAAGTCCTCTTAACCTGGTTTGGAAGTCTCTTGGTGAATCCAATGCA
GAACAATCTCAATGTGAAGTTATCAGTGGTCTTGACATCCACGTAAGCTT
CAATCAAGGTATGCCACTTCCTAACCAAAGACC
back to top