DC887873

Overview
NameDC887873
Unique NameDC887873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A2_DEBHA (40S ribosomal protein S1-B OS=Debaryomyces hansenii GN=RPS1B PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.896e-38
Identity = 79/144 (54.86%), Postives = 107/144 (74.31%), Query Frame = -3
Query:  253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 681
            SLVRKW +L+EA V VKT+D++ LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK+T +I PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G KV     + + EA
Sbjct:  112 SLVRKWQSLVEANVTVKTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKVSAGFKDVVLEA 255          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_APLCA (40S ribosomal protein S3a OS=Aplysia californica GN=RPS3A PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.700e-38
Identity = 79/142 (55.63%), Postives = 104/142 (73.24%), Query Frame = -3
Query:  280 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS--------EDVGVKVDR 681
            S+V+KW TLIEA VDVKTTD + LR+F IGFTK+  NQVK+TCYAQ +Q++ IR+KM EI+  + +S D+K +V K I + IG++IEK+   IYPL +V I KVK+LK PKFD+GKLME+HG+ S         + G KVDR
Sbjct:  112 SMVKKWQTLIEANVDVKTTDGYLLRVFAIGFTKKRNNQVKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDR 253          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A1_DEBHA (40S ribosomal protein S1-A OS=Debaryomyces hansenii GN=RPS1A PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.700e-38
Identity = 77/133 (57.89%), Postives = 103/133 (77.44%), Query Frame = -3
Query:  286 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 681
            SLVRKW +L+EA V VKT+D++ LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK+T +I PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:  112 SLVRKWQSLVEANVTVKTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_LYSTE (40S ribosomal protein S3a OS=Lysiphlebus testaceipes PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.313e-37
Identity = 77/151 (50.99%), Postives = 102/151 (67.55%), Query Frame = -3
Query:  247 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE------DVGVKVDRPADEPMPEAPT 681
            S+V+KW TLIEA+VDVKTTD + LR+FCIGFT++     ++T YAQ SQ+R IRRKM  I+  +   CDLK +V K + + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD         + G KVDRP     P   T
Sbjct:  115 SMVKKWQTLIEAHVDVKTTDGYLLRIFCIGFTQKDQMSTRKTSYAQHSQVRNIRRKMVSIVTDEITKCDLKGVVTKLVPDAIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGGSKTGEVGETGSKVDRPEGYEPPVQET 265          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_COCP7 (40S ribosomal protein S1 OS=Coccidioides posadasii (strain C735) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.715e-37
Identity = 87/144 (60.42%), Postives = 107/144 (74.31%), Query Frame = -3
Query:  253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 681
            SLVRKW +LIEA V VKTTD++ +RLF I FTKR   QVK+T YA++SQIR IR+KM EI+  +A+S  L  L  K + EVIGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ S +D G KV+R   E + E+
Sbjct:  112 SLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVEREFTEQVLES 254          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_COCIM (40S ribosomal protein S1 OS=Coccidioides immitis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.715e-37
Identity = 87/144 (60.42%), Postives = 107/144 (74.31%), Query Frame = -3
Query:  253 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 681
            SLVRKW +LIEA V VKTTD++ +RLF I FTKR   QVK+T YA++SQIR IR+KM EI+  +A+S  L  L  K + EVIGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ S +D G KV+R   E + E+
Sbjct:  112 SLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVEREFTEQVLES 254          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A2_PICST (40S ribosomal protein S1-B OS=Pichia stipitis GN=RPS1B PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.715e-37
Identity = 78/134 (58.21%), Postives = 104/134 (77.61%), Query Frame = -3
Query:  283 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVD 681
            SLVRKW +L+EA V VKT+D++ LR+F I FTKR  NQ+K+T YAQ+S++R++R+KM EIM  + ++  L  L  K I EVIGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G KV+
Sbjct:  112 SLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGALLALHGEGSTEEKGKKVN 245          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_PERAM (40S ribosomal protein S3a OS=Periplaneta americana GN=Parcxpwex01 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.240e-37
Identity = 77/148 (52.03%), Postives = 103/148 (69.59%), Query Frame = -3
Query:  247 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKVDRPADEPMPEAPT 681
            S+V+KW TLIEA VDVKTTD + LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+     S DLK +V K + + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD    S++ G +VDRP     P   T
Sbjct:  115 SMVKKWQTLIEANVDVKTTDGYLLRVFCIGFTNKDQMSQRKTCYAQHTQVRAIRKKMVEIITRDVTSSDLKEVVNKLLPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGKGGSDEPGARVDRPEGYEPPVQET 262          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A_ZYGRC (40S ribosomal protein S1 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.926e-37
Identity = 75/138 (54.35%), Postives = 97/138 (70.29%), Query Frame = -3
Query:  268 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADE 681
            S+VRKW TLIEA V VKT+D + +R+F I FT++ PNQVK+TCYAQ+S IR IR+   EI+  +  +  L     K I EVI +E+E AT  I+PLQNV +RKVK+LK PKFDLG LM +HG+ S++ G KV    DE
Sbjct:  112 SMVRKWQTLIEAQVTVKTSDEYVIRVFAIAFTRKQPNQVKKTCYAQSSHIRAIRKVFSEILTREVQNSTLAQFTSKLIPEVINKEMENATKDIFPLQNVHVRKVKLLKQPKFDLGSLMALHGEGSDETGKKVSGFKDE 249          
BLAST of DC887873 vs. ExPASy Swiss-Prot
Match: RS3A2_CLAL4 (40S ribosomal protein S1-B OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.926e-37
Identity = 79/133 (59.40%), Postives = 101/133 (75.94%), Query Frame = -3
Query:  286 SLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 681
            SLVRKW +L+EA V VKT D++ LR+F I FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I EVIGREIEK+T SI PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:  112 SLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQVKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
The following BLAST results are available for this feature:
BLAST of DC887873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RS3A2_DEBHA5.896e-3854.8640S ribosomal protein S1-B OS=Debaryomyces hanseni... [more]
RS3A_APLCA7.700e-3855.6340S ribosomal protein S3a OS=Aplysia californica G... [more]
RS3A1_DEBHA7.700e-3857.8940S ribosomal protein S1-A OS=Debaryomyces hanseni... [more]
RS3A_LYSTE1.313e-3750.9940S ribosomal protein S3a OS=Lysiphlebus testaceip... [more]
RS3A_COCP71.715e-3760.4240S ribosomal protein S1 OS=Coccidioides posadasii... [more]
RS3A_COCIM1.715e-3760.4240S ribosomal protein S1 OS=Coccidioides immitis G... [more]
RS3A2_PICST1.715e-3758.2140S ribosomal protein S1-B OS=Pichia stipitis GN=R... [more]
RS3A_PERAM2.240e-3752.0340S ribosomal protein S3a OS=Periplaneta americana... [more]
RS3A_ZYGRC2.926e-3754.3540S ribosomal protein S1 OS=Zygosaccharomyces roux... [more]
RS3A2_CLAL42.926e-3759.4040S ribosomal protein S1-B OS=Clavispora lusitania... [more]

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Properties
Property NameValue
Genbank descriptionDC887873 EIC Citrus sinensis cDNA clone EIC1031 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887873 ID=DC887873; Name=DC887873; organism=Citrus sinensis; type=EST; length=683bp
TGTCTTTATTTGACGAATTTTGGATAATGTCATGATCTAGTCCACTAGAA
TAAAGCAAGAAGAAAGCACATGTTCTTACCATAGAAACAACAGTAACCAT
CTCAGCTAGAATATTTAAAATCTGCAAACAACTTGAAACATTCATATATG
ATGAATTCATAACAAACAAAACTGCCCAGATCAGAATAGTAGTGAAAAAC
AAAACTAGAAAAATTTCTTCATTCACGTTCAAGCTCCAATCACTTCAGTT
GGTGCTTCAGGCATGGGCTCATCAGCTGGCCTATCCACCTTCACACCAAC
ATCTTCCGAGTAATCACCGTGAACCTCCATCAATTTTCCAAGATCAAACT
TGGGAGCTTTCAGGATCTTCACTTTGCGAATGAACACATTTTGTAAGGGG
TATATGCTTGACGTTGCCTTCTCAATCTCTCTTCCAATCACTTCAGCAAT
GAACTTTTCGACCAAGCTCTTAAGATCACAAGATGCTGCCTGAGCAACCA
TGATCTCCCTCATCTTGCGGCGAATCTGTCTAATCTGGCTGGTCTGTGCG
TAGCAAGTCCTCTTAACCTGGTTTGGAAGTCTCTTGGTGAATCCAATGCA
GAACAATCTCAATGTGAAGTTATCAGTGGTCTTGACATCCACGTAAGCTT
CAATCAAGGTATGCCACTTCCTAACCAAAGACC
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