CN185449

Overview
NameCN185449
Unique NameCN185449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185449_ssr161 microsatellite CN185449_ssr161:161..178. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:297..1050. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.409e-48
Identity = 99/160 (61.88%), Postives = 116/160 (72.50%), Query Frame = -2
Query:  254 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSSALTNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 727
            MSLIP  FGGRR+NVFDPFSLD+WDPF  F      + P+S+   E S F + R+DWKETP+AHVFKAD+PGL+         + R+LQISGER+ E+E+KN  WHRVERSSGKF RRFRLP+NAKV +VKASMENGVLTVT           KAIEISG
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDF------HVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.675e-47
Identity = 102/157 (64.97%), Postives = 116/157 (73.89%), Query Frame = -2
Query:  254 RRTNVFDPFSLDVWDPFDGFL-----SSALTNAPSSAR----ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 697
            RR+NVFDPFSLD+WDPFDGF      SS+ +  PS  R    ET+ FA ARIDWKETP+AHVFKAD+PGL+         +G ILQISGER+KEQEEK  +WHRVERSSGKFLRRFRLPDNAK EQ+KASMENGVLTVT           K+I+ISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.367e-47
Identity = 98/160 (61.25%), Postives = 115/160 (71.88%), Query Frame = -2
Query:  254 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSSALTNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 727
            MSLIPSIFGG R+NVFDPFSLD+WDPF  F      + P+S+   E S F N R+DWKET +AHV KAD+PGL+         + R+LQISGER+ E+E+KN  WHRV+RSSGKF+RRFRLP+NAKVEQVKA MENGVLTVT           K IEISG
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDF------HVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.367e-47
Identity = 102/159 (64.15%), Postives = 118/159 (74.21%), Query Frame = -2
Query:  254 MSLIPSIFGGRR-TNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 727
            MSLIP IFG RR T+VFDPFS+DV+DPF       L    S++ ETS FAN RIDWKETP+AHVFKADLPGL+         E R+LQISGER+ E+E+KN  WHRVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPF-----KELGFTVSNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.086e-46
Identity = 89/139 (64.03%), Postives = 108/139 (77.70%), Query Frame = -2
Query:  311 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 727
            MS+IPS F  +R+N+FDPFSLD WDPF G +S+        ARET+   NARIDWKETP+AHV KADLPG++         +GR+LQISGER +EQEEK+  WHRVERSSGKF+RRFRLP+NAK+++VKA MENGVLTV
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGIIST------EPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTV 133          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.852e-46
Identity = 95/157 (60.51%), Postives = 113/157 (71.97%), Query Frame = -2
Query:  254 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSS---------ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 697
            RR+NVFDPFSLD+WDPFDGF   + + +  S         + ET+ FA ARIDWKETP+AHVFKAD+PGL+         +G +LQISGERSKEQEEK  KWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+++G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.419e-46
Identity = 94/148 (63.51%), Postives = 112/148 (75.68%), Query Frame = -2
Query:  254 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 697
            RR+NVFDPFSLD+WDPFD    S +    +S  +T+ FANARIDWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KN KWHRVERSSG+F+RRFRLP+NAKV+QVKA MENGVLTVT           KAIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.390e-46
Identity = 93/148 (62.84%), Postives = 112/148 (75.68%), Query Frame = -2
Query:  254 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 697
            RR+NVFDPFSLD+WDPFD    S +    +S  +T+ FANARIDWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KN KWHRVERSSG+F+RRFRLP+NAKV+QVKA +ENGVLTVT           KAIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 7.039e-46
Identity = 93/150 (62.00%), Postives = 111/150 (74.00%), Query Frame = -2
Query:  254 RRTNVFDPFSLDVWDPFDGFLSSALTNA--PSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 697
            RR+NVFDPFSLD+WDPFDGF   + + +  P +  + + FA ARIDWKETP+AHVFKAD+PGL+         +G +LQISGER KEQEEK  KWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+I+G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.048e-45
Identity = 99/159 (62.26%), Postives = 118/159 (74.21%), Query Frame = -2
Query:  254 MSLIPSIFGGRRTN-VFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 727
            MSLIP IFG RR++ +FDPFS+DV+DPF       L    +++ ETS FAN RIDWKETP+AHVFKADLPGL+         E R+LQISGER+ E+E+KN KW RVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPF-----RELGFPGTNSGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
The following BLAST results are available for this feature:
BLAST of CN185449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP14_SOYBN4.409e-4861.8817.5 kDa class I heat shock protein OS=Glycine max... [more]
HS17A_ORYSJ1.675e-4764.9717.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP15_SOYBN6.367e-4761.2517.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOLPE6.367e-4764.1517.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_HELAN1.086e-4664.0317.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS181_ORYSJ1.852e-4660.5118.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_ORYSJ2.419e-4663.5116.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ5.390e-4662.8416.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS174_ORYSJ7.039e-4662.0017.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOLPE2.048e-4562.2617.7 kDa class I heat shock protein OS=Solanum per... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001F15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185449 ID=CN185449; Name=CN185449; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTCGCATTACAAAATATATTTTATTGCATCACACTC
TTATCATTTAAAAAACTAGTTACAACGCTTGAGACTGGCTCCTGAAGCTC
TTGCAAACACACAAACATAATCACATCAAATTAAACAGGGGGGAAGGGAA
GCTCTTGCAAACACACACACACACACACAAGGGCTTTGCTTTCGTACCAA
ATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTACACTTATCAC
TTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCTCCTCCTGTT
TAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCCTTAACCTGC
TCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAACTTGCCACT
GCTCCTCTCGACGCGATGCCACTTGGCATTCTTCTCTTCCTGCTCCTTGC
TCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTCAACCTCAACTTTC
ACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATACATGAGCCTG
AGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATTGGGATGTTTCCC
TAGCCGAAGACGGCGCGTTGGTAAGGGCAGAGGACAAGAACCCGTCGAAA
GGATCCCATACATCTAATGAAAATGGATCGAACACGTTGGTTCTTCGGCC
ACCGAAGATGCTTGGAATGAGTGACATTATGGCAAAACTGGGGGCGCTAA
TTAAA
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