CN185449

Overview
NameCN185449
Unique NameCN185449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.236e-30
Identity = 74/151 (49.01%), Postives = 90/151 (59.60%), Query Frame = -2
Query:  254 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQE---EKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 697
            R  NV DP S+D W   D F +       S A       N R+DWKETP AHVF ADLPG+R         +G +L ISGER++E++   + + +WH VERSSGKF RRFRLP  A+V+QV ASM+NGVLTVT           KAI ISG
Sbjct:    5 RSGNVLDPMSVDFWADADPFGA-----VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.245e-25
Identity = 60/134 (44.78%), Postives = 85/134 (63.43%), Query Frame = -2
Query:  308 GGRRTNVFDPFSLDVWDPF-DGFLSSALTNAPSSARETSQF-ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 703
            GG      +P S+D+ +PF D    +A   APS+A   +   + A +DWKET  AHVF AD+PG+R         E ++L+ISG+R++  EEK  +WHRVERSS +F+R  RLP NA  + V A+++NGVLT+T
Sbjct:   26 GGGGGGEIEPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTIT 159          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.799e-24
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = -2
Query:  308 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 577
            AR+DWKETP+ HV   D+PGL+         E R+L++SGER KE+E+K   WHRVERS GKF R+FRLP N  ++ VKA +ENGVLT+T
Sbjct:   67 ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLT 156          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.799e-24
Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = -2
Query:  308 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 583
            ++AR+DWKETP+ HV   D+PGL+         E R+L++SGER KE+++K   WHRVERS GKF R+F+LP N  ++ VKA MENGVLT+T
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLT 164          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.156e-22
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = -2
Query:  311 RETS-QFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 601
            R+TS   + AR+DWKET + H    D+PGL+         E  +L++SGER +E+E+K  +WHRVERS GKF R+F+LPDN  +E VKA +ENGVLT+
Sbjct:   62 RDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTI 159          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = -2
Query:  254 ILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 475
            ILQISGER+ E+E+KN  WHRVERSSGKF+R FRLPDNAKV+QVKASMENGVLTVT           KAIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = -2
Query:  308 VFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLP-GLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 685
            +FD  + D W+PF  F ++   +A   A +TS FAN  I+ +ET +A+VF+ADLP G++         EG +L I+GERS  +EEK  + H +ERS   F  RF LPD+A V+ V+ASM+ G+LTVT
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADA-WLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVT 131          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.787e-18
Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = -2
Query:  308 APSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEG-RILQISGERSK-------EQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 616
            A ++A E +  A AR DWKETP+AHV   D+PG+R         E  R+L++SGER +       E E    +WHR ER++G+F RRFR+P  A V +V A +++GVLTVT
Sbjct:   59 AAAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVT 169          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 8.110e-18
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = -2
Query:  311 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQ--EEKNA--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 598
            + +  + AR+DW+ET  AH    D+PG+R         + R+L+ISGER +E+  E+K     WHR ERS G+F R+ RLPDNA ++ + AS++NGVLTV
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.530e-16
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = -2
Query:  308 NAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 619
            NAPS    R+    A    D KE P ++VF  D+PGL+         E  +L ISGER +E+E++ AK+ R+ER  GKF+R+F LP+NA  + + A  ++GVLTVT
Sbjct:   30 NAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of CN185449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS166_ORYSJ9.236e-3049.0116.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ5.245e-2544.7818.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN5.799e-2456.6722.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA5.799e-2454.3522.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH4.156e-2251.0222.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN1.579e-2172.97Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17B_ORYSJ1.579e-2144.8817.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS219_ORYSJ2.787e-1845.0521.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS232_ORYSJ8.110e-1845.0023.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE1.530e-1643.4017.3 kDa class II heat shock protein OS=Solanum pe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001F15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185449 ID=CN185449; Name=CN185449; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTCGCATTACAAAATATATTTTATTGCATCACACTC
TTATCATTTAAAAAACTAGTTACAACGCTTGAGACTGGCTCCTGAAGCTC
TTGCAAACACACAAACATAATCACATCAAATTAAACAGGGGGGAAGGGAA
GCTCTTGCAAACACACACACACACACACAAGGGCTTTGCTTTCGTACCAA
ATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTACACTTATCAC
TTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCTCCTCCTGTT
TAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCCTTAACCTGC
TCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAACTTGCCACT
GCTCCTCTCGACGCGATGCCACTTGGCATTCTTCTCTTCCTGCTCCTTGC
TCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTCAACCTCAACTTTC
ACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATACATGAGCCTG
AGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATTGGGATGTTTCCC
TAGCCGAAGACGGCGCGTTGGTAAGGGCAGAGGACAAGAACCCGTCGAAA
GGATCCCATACATCTAATGAAAATGGATCGAACACGTTGGTTCTTCGGCC
ACCGAAGATGCTTGGAATGAGTGACATTATGGCAAAACTGGGGGCGCTAA
TTAAA
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