CN185449

Overview
NameCN185449
Unique NameCN185449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.591e-16
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = -2
Query:  311 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSS-----GKFLRRFRLPDNAKVEQVKASMENGVLTV 583
            + A IDW E+  +H+FK ++PG           EG +L I GE  KE++++N  WH  ER +      +FLRR  LP+N KV+QVKA +ENGVLTV
Sbjct:   20 STALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTV 115          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 52/125 (41.60%), Postives = 69/125 (55.20%), Query Frame = -2
Query:  308 LDVWDPFDGFLSSALTNAPSSA-----RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 667
            LDV D   G      T +  SA     R+    A    D KE P A+ F  D+PGL          + R+L +SGER +E+ E +AK+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   20 LDVPDGDAGAGGDNKTGSGGSATRTYVRDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 144          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.393e-15
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = -2
Query:  308 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 619
            NAP+    R+    A    D KE P ++VF  D+PG++         +  +L ISGER +E+E++  K+ ++ER  GK +R+F LP+NA +E + A  ++GVLTVT
Sbjct:   27 NAPTRTYVRDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVT 132          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = -2
Query:  308 DGFLSSALTNAP--SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 646
            DG   +   NAP  S  R+    A    D KE P ++VF+ D+PGL+         +  +L I GER +++E++ AK+ R+ER  GK +R+F LP+NA  + + A  ++GVL+VT
Sbjct:   25 DGAGDNKTHNAPTWSYVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVT 139          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.870e-14
Identity = 40/106 (37.74%), Postives = 65/106 (61.32%), Query Frame = -2
Query:  308 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 619
            + PS A  R+    A    D KE P ++VF  D+PGL+            +L ISG+R++E+E++  K+ R+ER  GKF+++F LP++A  +++ A  ++GVLTVT
Sbjct:   35 SGPSRAYVRDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVT 140          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.870e-14
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = -2
Query:  308 TNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSK----EQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 622
            T  P+ A  R+    A    D K+ P A+ F  D+PGL+         E R+L ISGER +    E++E++ K+ R+ER  GKF+R+F LPDNA V+++ A  ++GVLTVT
Sbjct:   36 TGGPTRAYVRDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVT 146          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = -2
Query:  308 SALTNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKN-AKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 631
            S+ ++APS     +    A    D KE P ++VF  D+PGL+            +L ISGER +E EEK  AK+ R+ER  GK +R+F LP+NA  E++ A  ++GVLTVT
Sbjct:   25 SSNSSAPSRTFMLDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVT 135          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.212e-13
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = -2
Query:  308 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 601
            R+    A    D KE   A+ F  D+PGL          + R+L ISGER +E+ E +AK+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   38 RDARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 134          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.212e-13
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = -2
Query:  308 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 568
            D KE P A+ F  D+PGL          + R+L ISGER +E+ E +AK+ R+ER  GKF+R+F LPDNA ++++ A   +GVLTVT
Sbjct:   56 DVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVT 141          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.700e-13
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = -2
Query:  308 RRTNVFDPFS----LDVWDPFDGFLSSALTNAPSSARETSQFANA-RIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 697
            +RT  +DPF     L  WDPF+      L N P  A      A     + +ET +A++FKADLPG+            R+  +SG+R +E+ E++ +++  ER+ G F R F LP+    + V+A ++NGVLT+T
Sbjct:   15 QRTREWDPFQQMQELMNWDPFE------LANHPWFANRQGPPAFVPAFEVRETKEAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLT 142          
The following BLAST results are available for this feature:
BLAST of CN185449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS157_ARATH7.591e-1644.7915.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HSP22_MAIZE9.914e-1641.6017.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_PEA8.393e-1538.6817.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_SOYBN1.432e-1437.3917.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP21_HELAN1.870e-1437.7417.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP18_ORYSJ1.870e-1441.4418.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP21_IPONI5.440e-1441.4417.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP23_MAIZE1.212e-1344.9017.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP21_MAIZE1.212e-1347.1317.5 kDa class II heat shock protein OS=Zea mays P... [more]
SP21_STIAU2.700e-1334.81Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001F15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185449 ID=CN185449; Name=CN185449; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTCGCATTACAAAATATATTTTATTGCATCACACTC
TTATCATTTAAAAAACTAGTTACAACGCTTGAGACTGGCTCCTGAAGCTC
TTGCAAACACACAAACATAATCACATCAAATTAAACAGGGGGGAAGGGAA
GCTCTTGCAAACACACACACACACACACAAGGGCTTTGCTTTCGTACCAA
ATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTACACTTATCAC
TTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCTCCTCCTGTT
TAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCCTTAACCTGC
TCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAACTTGCCACT
GCTCCTCTCGACGCGATGCCACTTGGCATTCTTCTCTTCCTGCTCCTTGC
TCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTCAACCTCAACTTTC
ACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATACATGAGCCTG
AGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATTGGGATGTTTCCC
TAGCCGAAGACGGCGCGTTGGTAAGGGCAGAGGACAAGAACCCGTCGAAA
GGATCCCATACATCTAATGAAAATGGATCGAACACGTTGGTTCTTCGGCC
ACCGAAGATGCTTGGAATGAGTGACATTATGGCAAAACTGGGGGCGCTAA
TTAAA
back to top