CN185449

Overview
NameCN185449
Unique NameCN185449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = -2
Query:  308 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEE-KNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 619
            N PS A  R+    A    D  E P A+VF  D+PG++            +L +SG+R ++ +E +  K+ R+ER  GKF+R+F+LPDNA +E++ A+  +GVL VT
Sbjct:   30 NNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVT 136          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = -2
Query:  308 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERS-KEQEEKNA-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 601
            R+    A    D KE P ++VF AD+PG++         +  +L +SGER+ +E++EK+  K+ R+ER  GKF+R+F LP+NA VE + A  ++GVL VT
Sbjct:   48 RDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVT 147          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 44/119 (36.97%), Postives = 60/119 (50.42%), Query Frame = -2
Query:  311 FDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGER-----SKEQE-EKNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 649
            F G     L   P      S  A A +DW ETP +HV + ++PGL          +G +L + G        KE+E EK+  WH  ER   +F R   LP   +VEQ++AS++NGVLTV
Sbjct:    6 FGGPFRRILYGRPFPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTV 124          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = -2
Query:  308 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQI--------------SGERSKEQEEKN--AKWHRVERSSGK---FLRRFRLPDNAKVEQVKASMENGVLTVT 583
            A   +DW+ETP AHVF+ DLPGL          +G IL++              +G+ S E+EE+N   +WH  ER++G+    + +FRLP++A  ++  A M +GVLTVT
Sbjct:   25 ARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVT 135          
BLAST of CN185449 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.092e-12
Identity = 39/107 (36.45%), Postives = 60/107 (56.07%), Query Frame = -2
Query:  308 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEE-KNAKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 619
            N PS    R+    A    D  E P A+ F  D+PG++            +L +SGER +E +E +  K+ R+ER  GKF+R+F+LP+NA ++++ A   +GVL VT
Sbjct:   29 NNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVT 135          
The following BLAST results are available for this feature:
BLAST of CN185449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS177_ARATH3.526e-1338.3217.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP22_IPONI6.015e-1341.0018.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP16_ORYSJ7.855e-1336.9716.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS178_ORYSJ3.899e-1237.8417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS176_ARATH5.092e-1236.4517.6 kDa class II heat shock protein OS=Arabidopsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001F15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185449 ID=CN185449; Name=CN185449; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTCGCATTACAAAATATATTTTATTGCATCACACTC
TTATCATTTAAAAAACTAGTTACAACGCTTGAGACTGGCTCCTGAAGCTC
TTGCAAACACACAAACATAATCACATCAAATTAAACAGGGGGGAAGGGAA
GCTCTTGCAAACACACACACACACACACAAGGGCTTTGCTTTCGTACCAA
ATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTACACTTATCAC
TTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCTCCTCCTGTT
TAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCCTTAACCTGC
TCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAACTTGCCACT
GCTCCTCTCGACGCGATGCCACTTGGCATTCTTCTCTTCCTGCTCCTTGC
TCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTCAACCTCAACTTTC
ACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATACATGAGCCTG
AGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATTGGGATGTTTCCC
TAGCCGAAGACGGCGCGTTGGTAAGGGCAGAGGACAAGAACCCGTCGAAA
GGATCCCATACATCTAATGAAAATGGATCGAACACGTTGGTTCTTCGGCC
ACCGAAGATGCTTGGAATGAGTGACATTATGGCAAAACTGGGGGCGCTAA
TTAAA
back to top