DC887870

Overview
NameDC887870
Unique NameDC887870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887870 vs. ExPASy Swiss-Prot
Match: CETN1_MOUSE (Centrin-1 OS=Mus musculus GN=Cetn1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.672e-23
Identity = 51/95 (53.68%), Postives = 69/95 (72.63%), Query Frame = -3
Query:  325 MINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 609
            MI+EVD +  G I F +FL +M +KM + D++EE+ +AFR+FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N EEF+K+M
Sbjct:   72 MISEVDKEATGKISFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGESLTDEELQEMIDEADRDGDGEVNEEEFLKIM 166          
BLAST of DC887870 vs. ExPASy Swiss-Prot
Match: TNNC2_RANES (Troponin C, skeletal muscle OS=Rana esculenta PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.650e-22
Identity = 48/98 (48.98%), Postives = 75/98 (76.53%), Query Frame = -3
Query:  325 MINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 609
            +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FDK+ +G+I + EL  ++ + GE +TDEE++E++++ D + DG+I+++EF+K+M
Sbjct:   61 IIEEVDEDGSGTIDFEEFLVMMVRQMKEDAQGKSEEELAECFRIFDKNADGYIDSEELGEILRSSGESITDEEIEELMKDGDKNNDGKIDFDEFLKMM 158          
BLAST of DC887870 vs. ExPASy Swiss-Prot
Match: CETN2_MOUSE (Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.155e-22
Identity = 47/95 (49.47%), Postives = 71/95 (74.74%), Query Frame = -3
Query:  325 MINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 609
            MI+E+D +G G ++F +FL +M +KM + D++EE+ +AF++FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N +EF+++M
Sbjct:   72 MISEIDKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVNEQEFLRIM 166          
BLAST of DC887870 vs. ExPASy Swiss-Prot
Match: CATR_DUNSA (Caltractin OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.675e-22
Identity = 50/95 (52.63%), Postives = 67/95 (70.53%), Query Frame = -3
Query:  325 MINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 609
            MI ++D  G+GTIDF EFL +M  KM + DS EE+ +AF++FD D  GFI+   L+ V   LGE LTDEE+ EM  EAD +GDGQI+ +EF ++M
Sbjct:   69 MIADIDKAGSGTIDFEEFLQMMTSKMGERDSREEIIKAFKLFDDDNTGFITLKNLKRVAKELGENLTDEELQEMTDEADRNGDGQIDEDEFYRIM 163          
BLAST of DC887870 vs. ExPASy Swiss-Prot
Match: CML12_ARATH (Calmodulin-like protein 12 OS=Arabidopsis thaliana GN=CML12 PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 6.269e-22
Identity = 60/116 (51.72%), Postives = 72/116 (62.07%), Query Frame = -3
Query:  316 DMINEVDADGNGTIDFPEFLNLMA---------RKMKDT--------DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 612
            DM+NEVD DG+GTIDFPEFL LMA         R  K T        D   E +EAFRVFDK+ +G+I+  ELR  M +LGE  T  E+ +MI EAD DGDG I++ EFV VM  K
Sbjct:  140 DMMNEVDLDGDGTIDFPEFLYLMAKNQGHDQAPRHTKKTMVDYQLTDDQILEFREAFRVFDKNGDGYITVNELRTTMRSLGETQTKAELQDMINEADADGDGTISFSEFVCVMTGK 255          

HSP 2 Score: 89.3521 bits (220), Expect = 1.598e-17
Identity = 48/112 (42.86%), Postives = 71/112 (63.39%), Query Frame = -3
Query:  325 DMINEVDADGNGTIDFPEFLNLMARKM---------------KDTDSE-EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 612
            D++NE D DG+GTIDFPEFL +MA+                 K TD +  E +E+FR+FDK+ +G I+  ELR VM +LG+  T  ++ +M+ E D+DGDG I++ EF+ +M
Sbjct:   51 DLMNEADLDGDGTIDFPEFLCVMAKNQGHDQAPRHTKKTMADKLTDDQITEYRESFRLFDKNGDGSITKKELRTVMFSLGKNRTKADLQDMMNEVDLDGDGTIDFPEFLYLM 162          
BLAST of DC887870 vs. ExPASy Swiss-Prot
Match: CETN2_BOVIN (Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.269e-22
Identity = 46/95 (48.42%), Postives = 71/95 (74.74%), Query Frame = -3
Query:  325 MINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 609
            MI+E+D +G G ++F +FL +M +KM + D++EE+ +AF++FD D+ G IS   L+ V   LGE L+DEE+ EMI EAD DGDG++N +EF+++M
Sbjct:   72 MISEIDKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLSDEELQEMIDEADRDGDGEVNEQEFLRIM 166          
BLAST of DC887870 vs. ExPASy Swiss-Prot
Match: CETN1_BOVIN (Centrin-1 OS=Bos taurus GN=CETN1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.269e-22
Identity = 49/95 (51.58%), Postives = 69/95 (72.63%), Query Frame = -3
Query:  325 MINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 609
            MI +VD +G G I F +FL +M +KM + D++EE+ +AFR+FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N +EF+++M
Sbjct:   72 MIADVDKEGTGKISFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVNEDEFLRIM 166          
BLAST of DC887870 vs. ExPASy Swiss-Prot
Match: CETN2_HUMAN (Centrin-2 OS=Homo sapiens GN=CETN2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.069e-21
Identity = 46/95 (48.42%), Postives = 71/95 (74.74%), Query Frame = -3
Query:  325 MINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 609
            MI+E+D +G G ++F +FL +M +KM + D++EE+ +AF++FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG+++ +EF+++M
Sbjct:   72 MISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 166          
BLAST of DC887870 vs. ExPASy Swiss-Prot
Match: CML8_ORYSJ (Probable calcium-binding protein CML8 OS=Oryza sativa subsp. japonica GN=CML8 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.397e-21
Identity = 48/95 (50.53%), Postives = 69/95 (72.63%), Query Frame = -3
Query:  325 MINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 609
            MI EVD DG+GTIDF EF+++M  KM + D+ EEL +AF++ DKD NG IS  +++ +    GE  T +EV EMI  AD +GDG++++EEF+K+M
Sbjct:   87 MIAEVDKDGSGTIDFDEFVHMMTDKMGERDAREELNKAFKIIDKDNNGKISDVDIQRLAIETGEPFTLDEVREMIEAADENGDGEVDHEEFLKMM 181          
BLAST of DC887870 vs. ExPASy Swiss-Prot
Match: TNNC2_RABIT (Troponin C, skeletal muscle OS=Oryctolagus cuniculus GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.111e-21
Identity = 47/98 (47.96%), Postives = 72/98 (73.47%), Query Frame = -3
Query:  325 MINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 609
            +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD++ +G+I A EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:   59 IIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
The following BLAST results are available for this feature:
BLAST of DC887870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
CETN1_MOUSE9.672e-2353.68Centrin-1 OS=Mus musculus GN=Cetn1 PE=2 SV=1[more]
TNNC2_RANES1.650e-2248.98Troponin C, skeletal muscle OS=Rana esculenta PE=1... [more]
CETN2_MOUSE2.155e-2249.47Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1[more]
CATR_DUNSA3.675e-2252.63Caltractin OS=Dunaliella salina PE=2 SV=1[more]
CML12_ARATH6.269e-2251.72Calmodulin-like protein 12 OS=Arabidopsis thaliana... [more]
CETN2_BOVIN6.269e-2248.42Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1[more]
CETN1_BOVIN6.269e-2251.58Centrin-1 OS=Bos taurus GN=CETN1 PE=2 SV=1[more]
CETN2_HUMAN1.069e-2148.42Centrin-2 OS=Homo sapiens GN=CETN2 PE=1 SV=1[more]
CML8_ORYSJ1.397e-2150.53Probable calcium-binding protein CML8 OS=Oryza sat... [more]
TNNC2_RABIT3.111e-2147.96Troponin C, skeletal muscle OS=Oryctolagus cunicul... [more]

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Properties
Property NameValue
Genbank descriptionDC887870 EIC Citrus sinensis cDNA clone EIC1024 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887870 ID=DC887870; Name=DC887870; organism=Citrus sinensis; type=EST; length=614bp
ACTATTTCGACCAAAAGAAAAATAAACATCGCAAGGGCAGAAATTAATGG
AAACACATTAAACAGACAACAACATTCATAGAACAGCAGAACAACTAAAA
TAATAAAAACCGAAAAGTTTTGCGAGTCACAAGACATATTGACGAGGGAG
ACAACATTCTTCCTACACCATCAGGCCCATCACCATTAAAAGACCATTGC
TTCCTTTAGCCTGACCCTCATGACTATCAAATTAAAAATTGTAAAAGAGA
AAACTAGGAATCCCTTTATAATTTAGTCAACCCATTTTATAAGTATTGGT
GGGTTGGGGTCATTACTTGGCCATCATAACCTTGACAAATTCCTCATAAT
TTATCTGGCCATCACCATCAACATCAGCTTCCCTTATCATCTCATCAACT
TCTTCATCAGTAAGTTTCTCTCCTAGGTTTGTCATCACATGGCGCAGCTC
AGCAGCTGAGATGAAACCATTCTGATCCTTGTCGAAAACCCGGAAGGCCT
CTTTCAGCTCCTCCTCAGAGTCGGTATCCTTCATCTTCCTGGCCATGAGG
TTTAGGAATTCAGGAAAATCAATAGTTCCATTACCATCAGCATCCACTTC
ATTGATCATGTCCT
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