DC887868

Overview
NameDC887868
Unique NameDC887868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
The following BLAST results are available for this feature:
BLAST of DC887868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
UBIQ_LUPAL5.172e-2097.92Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS5.172e-2097.92Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_HORVU5.172e-2097.92Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]
UBIQ_HELAN5.172e-2097.92Ubiquitin OS=Helianthus annuus PE=3 SV=1[more]
UBIQ_DESAN5.172e-2097.92Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA5.172e-2097.92Ubiquitin OS=Daucus carota PE=3 SV=1[more]
UBIQ_BRARA5.172e-2097.92Ubiquitin OS=Brassica rapa PE=3 SV=1[more]
UBIQ_AVESA5.172e-2097.92Ubiquitin OS=Avena sativa PE=1 SV=1[more]
UBIQ_AVEFA5.172e-2097.92Ubiquitin OS=Avena fatua PE=3 SV=1[more]
UBIQ_ASPOF5.172e-2097.92Ubiquitin OS=Asparagus officinalis PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC887868 EIC Citrus sinensis cDNA clone EIC1022 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887868 ID=DC887868; Name=DC887868; organism=Citrus sinensis; type=EST; length=335bp
AAGACAATATTATCAATGATAACTAGTCTTCTTCAAGAAGACAAGACAAC
ATAGCGACCAGCTTGAACAGAAAATACATTGACACGTCCCTCAGAAACCA
CCACCACGGAGACGGAGGACGAGATGAAGAGTGGACTCCTTCTGAATGTT
GTAATCAGCAAGAGTACGGCCGTCCTCAAGCTGCTTCCCAGCGAAGATGA
GCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTTGGCCTTG
ACATTGTCNATGGTATCCGAACTCTCCACCTCCAGGGTAACCGTCTTCCC
GGTCAATGTCTTGACNAAAATCTGCATGCCACCCC
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