DC887868

Overview
NameDC887868
Unique NameDC887868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = -3
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT +NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66          
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.379e-19
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = -3
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   19 SSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66          
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.379e-19
Identity = 45/47 (95.74%), Postives = 45/47 (95.74%), Query Frame = -3
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT DNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   20 SDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66          
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.719e-19
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = -3
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT +NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66          
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.469e-19
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = -3
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            +SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   19 ASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66          
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.469e-19
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = -3
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            +SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   19 ASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66          
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.469e-19
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = -3
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            +SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   19 ASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66          
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66          
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = -3
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            +SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYNIQKEST
Sbjct:   19 ASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKEST 66          
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66          
The following BLAST results are available for this feature:
BLAST of DC887868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
UBIQ_ACECL3.353e-1993.75Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_NEUCR4.379e-1993.75Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_EUPEU4.379e-1995.74Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_ACACA5.719e-1993.75Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_TETPY7.469e-1991.67Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_GEOCY7.469e-1991.67Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_CAEEL7.469e-1991.67Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_XENLA9.754e-1993.62Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_TRYBB9.754e-1991.67Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_SPOFR9.754e-1993.62Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC887868 EIC Citrus sinensis cDNA clone EIC1022 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887868 ID=DC887868; Name=DC887868; organism=Citrus sinensis; type=EST; length=335bp
AAGACAATATTATCAATGATAACTAGTCTTCTTCAAGAAGACAAGACAAC
ATAGCGACCAGCTTGAACAGAAAATACATTGACACGTCCCTCAGAAACCA
CCACCACGGAGACGGAGGACGAGATGAAGAGTGGACTCCTTCTGAATGTT
GTAATCAGCAAGAGTACGGCCGTCCTCAAGCTGCTTCCCAGCGAAGATGA
GCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTTGGCCTTG
ACATTGTCNATGGTATCCGAACTCTCCACCTCCAGGGTAACCGTCTTCCC
GGTCAATGTCTTGACNAAAATCTGCATGCCACCCC
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