DC887868

Overview
NameDC887868
Unique NameDC887868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:    9 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 55
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
The following BLAST results are available for this feature:
BLAST of DC887868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
UBIQ_MACFA9.754e-1993.62Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_LUMTE9.754e-1993.62Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIQ_ICTPU9.754e-1993.62Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]
UBIQ_HUMAN9.754e-1993.62Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]
UBIQ_HORSE9.754e-1993.62Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]
UBIQ_GORGO9.754e-1993.62Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S... [more]
UBIQ_FELCA9.754e-1993.62Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1[more]
UBIQ_EIMBO9.754e-1993.62Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_DROME9.754e-1993.62Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1... [more]
UBIQ_CRIGR9.754e-1993.62Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC887868 EIC Citrus sinensis cDNA clone EIC1022 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887868 ID=DC887868; Name=DC887868; organism=Citrus sinensis; type=EST; length=335bp
AAGACAATATTATCAATGATAACTAGTCTTCTTCAAGAAGACAAGACAAC
ATAGCGACCAGCTTGAACAGAAAATACATTGACACGTCCCTCAGAAACCA
CCACCACGGAGACGGAGGACGAGATGAAGAGTGGACTCCTTCTGAATGTT
GTAATCAGCAAGAGTACGGCCGTCCTCAAGCTGCTTCCCAGCGAAGATGA
GCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTTGGCCTTG
ACATTGTCNATGGTATCCGAACTCTCCACCTCCAGGGTAACCGTCTTCCC
GGTCAATGTCTTGACNAAAATCTGCATGCCACCCC
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