DC887868

Overview
NameDC887868
Unique NameDC887868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.754e-19
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT +NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   19 SSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.838e-18
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SD+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.838e-18
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKEST
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.838e-18
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = -3 
Query:  130 SDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 270
            SD+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   20 SDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
The following BLAST results are available for this feature:
BLAST of DC887868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
UBIQ_CHICK9.754e-1993.62Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA9.754e-1993.62Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO9.754e-1993.62Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA9.754e-1993.62Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR9.754e-1993.62Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_BOVIN9.754e-1993.62Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_AGLNE9.754e-1991.67Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_STRPU2.838e-1891.49Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_LEIMA2.838e-1891.49Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_ENCCU2.838e-1891.49Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]

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Properties
Property NameValue
Genbank descriptionDC887868 EIC Citrus sinensis cDNA clone EIC1022 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887868 ID=DC887868; Name=DC887868; organism=Citrus sinensis; type=EST; length=335bp
AAGACAATATTATCAATGATAACTAGTCTTCTTCAAGAAGACAAGACAAC
ATAGCGACCAGCTTGAACAGAAAATACATTGACACGTCCCTCAGAAACCA
CCACCACGGAGACGGAGGACGAGATGAAGAGTGGACTCCTTCTGAATGTT
GTAATCAGCAAGAGTACGGCCGTCCTCAAGCTGCTTCCCAGCGAAGATGA
GCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTTGGCCTTG
ACATTGTCNATGGTATCCGAACTCTCCACCTCCAGGGTAACCGTCTTCCC
GGTCAATGTCTTGACNAAAATCTGCATGCCACCCC
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