DC887865

Overview
NameDC887865
Unique NameDC887865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887865 vs. ExPASy Swiss-Prot
Match: RL7A_SULTO (50S ribosomal protein L7Ae OS=Sulfolobus tokodaii GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = -2
Query:  216 NLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKL 545
            +L   +LD V++A    ++KKG NE TK + RG ++ +V+A D            L E+K +PYV+VPSK+ALG ACG+   V A S    +  + K  + ++   +E+L
Sbjct:   14 DLANKVLDAVRKAKESGKIKKGTNETTKAVERGQAKLVVIATDVQPEEIVAHLPLLCEEKKIPYVYVPSKKALGEACGL--QVAAASAAIIDPGEAKDLLDEIVKRVEEL 121          
BLAST of DC887865 vs. ExPASy Swiss-Prot
Match: NHP2_BOVIN (H/ACA ribonucleoprotein complex subunit 2 OS=Bos taurus GN=NHP2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = -2
Query:  261 VNXKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 578
            +N  A PLA   LT  +   +++A   KQ+++G  E  K +N+G    +V+A DT           + ED+N+PYV++PSK  LG A G  RP     V  +E  Q
Sbjct:   31 LNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFINKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMVKPHEEYQ 136          
BLAST of DC887865 vs. ExPASy Swiss-Prot
Match: NHP2_HUMAN (H/ACA ribonucleoprotein complex subunit 2 OS=Homo sapiens GN=NHP2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 37/105 (35.24%), Postives = 54/105 (51.43%), Query Frame = -2
Query:  261 NXKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 575
            N  A PLA   LT  +   +++A   KQ+++G  E  K +N+G    +V+A DT           + ED+N+PYV++PSK  LG A G  RP     V  +E  Q
Sbjct:   32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMVKPHEEYQ 136          
BLAST of DC887865 vs. ExPASy Swiss-Prot
Match: NHP2_MOUSE (H/ACA ribonucleoprotein complex subunit 2 OS=Mus musculus GN=Nhp2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 38/106 (35.85%), Postives = 55/106 (51.89%), Query Frame = -2
Query:  261 VNXKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 578
            +N  A PLA   LT  +   +++A   KQ+++G  E  K +N+G    +V+A DT           L ED+N+PYV++PSK  LG A G  RP     V  +E  Q
Sbjct:   31 LNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVLCEDQNLPYVYIPSKTDLGAATGSKRPTCVIMVKPHEEYQ 136          
BLAST of DC887865 vs. ExPASy Swiss-Prot
Match: NHP2_XENLA (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus laevis GN=nhp2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 42/132 (31.82%), Postives = 63/132 (47.73%), Query Frame = -2
Query:  261 TFVRFISCHKNP*PPSPATTKMTGEAVNXKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 656
            T V+   C + P  PS +  ++    +N  A PLA   LT  +   V++A   K +++G  E  K +N+G    +VMA DT           + ED+ +PY +VPSK  LG A G  RP     +  +E  Q
Sbjct:    2 TKVKKEECEEVPETPSKSYDELLSY-LNPVAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILIKPHEDYQ 132          
BLAST of DC887865 vs. ExPASy Swiss-Prot
Match: NHP2_PONAB (H/ACA ribonucleoprotein complex subunit 2 OS=Pongo abelii GN=NHP2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 36/105 (34.29%), Postives = 54/105 (51.43%), Query Frame = -2
Query:  261 NXKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 575
            N  A PLA   LT  +   +++A   KQ+++G  E  K +N+G    +V+A DT           + ED+N+PYV++PSK  LG A G  RP     V  ++  Q
Sbjct:   32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMVKPHDEYQ 136          
The following BLAST results are available for this feature:
BLAST of DC887865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL7A_SULTO1.843e-1235.4550S ribosomal protein L7Ae OS=Sulfolobus tokodaii ... [more]
NHP2_BOVIN4.105e-1234.91H/ACA ribonucleoprotein complex subunit 2 OS=Bos t... [more]
NHP2_HUMAN7.003e-1235.24H/ACA ribonucleoprotein complex subunit 2 OS=Homo ... [more]
NHP2_MOUSE9.146e-1235.85H/ACA ribonucleoprotein complex subunit 2 OS=Mus m... [more]
NHP2_XENLA1.560e-1131.82H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_PONAB1.560e-1134.29H/ACA ribonucleoprotein complex subunit 2 OS=Pongo... [more]

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Properties
Property NameValue
Genbank descriptionDC887865 EIC Citrus sinensis cDNA clone EIC1017 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887865 ID=DC887865; Name=DC887865; organism=Citrus sinensis; type=EST; length=672bp
CATTGTTTGTAGCATCATTCATTCATTGCAGGTTCTGGTAAATATGATTC
CAAAAGCTTTCCCATAATGCATGACAAGAAAACATAAAAGACAAAAATAC
AAAGATTAATAATAGAAGATTTCCAAGCAGCACAACTACACCATCAGTCA
AAGCCTCTAACCACCATCAAAGAGGCCCATCACACCGAATATGAATCCCA
TTATATTCATATCAAGAGCTTCTCAATGGCATCCTTCAGCTGTTGAATTT
GAGTCTTCAACTGACTCGCCTCATTTGAGGTCACAGAGCAAGCAATGACA
GGTCTTGTGACCCCACATGCCCTGCCAAGAGCCTGCTTTGAAGGGACAAA
AACATAGGGAACATTCTTGTCCTCTGCAAGCAGTGGAAGATGAAGAAGAA
TCTCCAGAGGCTCGGTATCAGCAGCCATCACAATAAACTCGGAGATACCT
CTGTTAAGAGTCTTAGTAGCTTCATTGGCGCCCTTTTTGAGCTGCTTGTA
ATTGGCAGCTTGCTGAACGAGATCCAGTATCGTGATTGTGAGATTAGAAT
CTGCTAGCGGGTAAGCTTTANGGTTCACTGCTTCTCCTGTCATTTTCGTG
GTGGCGGGGGACGGAGGCTAAGGGTTTTTGTGGCAGCTAATGAAGCGTAC
AAAGGTCCCAGGGGTTTAAGCC
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