CN185435

Overview
NameCN185435
Unique NameCN185435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN185435 vs. ExPASy Swiss-Prot
Match: AGD2_ARATH (ADP-ribosylation factor GTPase-activating protein AGD2 OS=Arabidopsis thaliana GN=AGD2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 3 
Query:  171 NKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLD 311
            N  C +CNA +P WAS+  G+ +CI+CS VHR+LGVHIS VRS  LD
Sbjct:  479 NNTCAECNAPDPDWASLNLGVLMCIECSGVHRNLGVHISKVRSLTLD 525
The following BLAST results are available for this feature:
BLAST of CN185435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
AGD2_ARATH8.123e-1159.57ADP-ribosylation factor GTPase-activating protein ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001F07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185435 ID=CN185435; Name=CN185435; organism=Citrus sinensis; type=EST; length=803bp
GAGGAGGTTCATAATCTCATATTCTCGTTCAGGAAAAAATCAAAATCAAA
ATTTACAATCTTGGGGTTTCGTTTTTCGTAATTTTTATTTCATAAAATTC
TTTCTCGATGGCTTCCGATAATTTGACCGATAAGAACCTTGTTTTCAGAA
AACTGAAAGCAAAATCGGAAAACAAGATGTGTTTTGATTGTAATGCTAAG
AACCCGACGTGGGCCTCGGTGACTTACGGGATCTTTCTCTGCATCGATTG
CTCTGCCGTTCACCGTAGTCTCGGTGTCCACATCAGCTTCGTTAGGTCAA
CAAATTTAGACTCATGGAGTGCTGAGCAGTTGAAAATGATGGTGTATGGA
GGAAACAACCGTGCACAAGTTTTCTTTAAGCAGCATGGATGGACAGATGG
AGGCAAAATTGAGGCTAAGTATACCTCAAGAGCTGCTGAATTATACAAGC
AGATTCTTGCGAAAGAAGTTGCTAAAAGTATGGCAGAAGAGGCAGGCTTG
CCATCATCACCTGTTGCCTCGCAGCCGGCACAAGCAGCTAATGCACTTCC
AGATGTTAAGATCCAGGATGCTCCTAAAGAAAATTATCAAGGAAGGCAAG
AAACTCAAGACGCTCCTGGTTCGCCAAAAGTTTCTCATACAGTTCTTACT
AGTACCGTCAAAAAACCACTTGGTGCAAAGAAATCAGGGAAGACTGGGGG
TCTAGGTGCCCGAAAGCTGACTTCAAAGCCAAGTGAAAGTCTATATGAGC
AGAAGCCTGAAGAACCTTCTGTCCCTATTTCTTCCTCAACCAGCAACACA
TCG
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