DC887863

Overview
NameDC887863
Unique NameDC887863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22_TRIGR (60S ribosomal protein L22 OS=Tripneustes gratilla GN=RPL22 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.338e-22
Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = -1
Query:  121 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 441
            F IDC  PVED IMD ++ E+FLQERIKV GK   L  ++ + R+K+K+TVTS+  FS             K+N+RDWLRV+A+NK+   YELRYF I +++ EEED
Sbjct:   25 FTIDCTLPVEDGIMDASNFEQFLQERIKVNGKTKNLTTNIVIERKKSKVTVTSEIAFSKRYLKYLTKKYLKKNNLRDWLRVVAANKES--YELRYFQINQDDEEEED 129          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22_XENTR (60S ribosomal protein L22 OS=Xenopus tropicalis GN=rpl22 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 3.460e-21
Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = -1
Query:  121 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 441
            F +DC  PVED IMD A+ E+FL +RIKV GK G LG   V++ R K+KITV+S+  FS             K+N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLHDRIKVNGKVGNLGGGVVSIERSKSKITVSSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22_XENLA (60S ribosomal protein L22 OS=Xenopus laevis GN=rpl22 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 3.460e-21
Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = -1
Query:  121 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 441
            F +DC  PVED IMD A+ E+FL +RIKV GK G LG   V++ R K+KITV+S+  FS             K+N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLHDRIKVNGKVGNLGGGVVSIERSKSKITVSSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22_DROME (60S ribosomal protein L22 OS=Drosophila melanogaster GN=RpL22 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = -1
Query:  121 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 441
            F IDC    ED IMD+A  EK+++ R+KV GK   LG++VT  R K K+ V+SD +FS             K+++RDW+RV+A+ KD   YELRYF I+ N+ E++D
Sbjct:  193 FTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHFSKAYLKYLTKKYLKKNSLRDWIRVVANEKDS--YELRYFRISSNDDEDDD 297          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22L_XENTR (60S ribosomal protein L22-like 1 OS=Xenopus tropicalis GN=rpl22l1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.239e-19
Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = -1
Query:  121 TFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 444
            +F +D   PVED I D  + E+FL+ERIKV GK G LG  V + R K+KITV+S+  FS             K+N+RDWLRV+AS  D+  YELRYF I++++  E +
Sbjct:   14 SFTLDLTHPVEDGIFDSVNFEQFLKERIKVNGKTGNLGSIVHIGRLKSKITVSSEKKFSKRYLKYLTKKYLKKNNLRDWLRVVAS--DKETYELRYFQISQDDESESE 119          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22_GADMO (60S ribosomal protein L22 (Fragment) OS=Gadus morhua GN=rpl22 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.230e-19
Identity = 52/105 (49.52%), Postives = 69/105 (65.71%), Query Frame = -1
Query:  130 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGE 441
            F +DC  PVED IMD A+ E+FLQERIKV GK+G LG+  V++ R  +KI+V S+  FS             K+N+RDWLRV+A+ K+   YELRYF I ++E E
Sbjct:   18 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKSGNLGNGVVSIERXXSKISVNSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANTKES--YELRYFQINQDEEE 120          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22L_HUMAN (60S ribosomal protein L22-like 1 OS=Homo sapiens GN=RPL22L1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.230e-19
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  124 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEE 441
            F +D   PVED I D  + E+FL+E++KV GK G LG+ V + R K KITV S+  FS             K+N+RDWLRV+AS  D+  YELRYF I+++E E E
Sbjct:   16 FNLDLTHPVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERFKNKITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVAS--DKETYELRYFQISQDEDESE 119          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22L_MOUSE (60S ribosomal protein L22-like 1 OS=Mus musculus GN=Rpl22l1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.099e-18
Identity = 51/109 (46.79%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  121 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENE--GEEED 441
            F +D   PVED I D  + E+FL+E++KV GK G LG+ V + R K KITV S+  FS             K+N+RDWLRV+AS  D+  YELRYF I+++E   E ED
Sbjct:   16 FHLDLTHPVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERLKNKITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVAS--DKETYELRYFQISQDEDGSESED 122          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22_SCHPO (60S ribosomal protein L22 OS=Schizosaccharomyces pombe GN=rpl22 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.042e-17
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = -1
Query:  124 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRE-KTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEE 441
            ++ID    V DKI D+A+ EK+L +RIKV GK G LG SV V+RE  +KI V +  +FS             KH++RDWLRV+++ K   VYELRY+N+     EEE
Sbjct:   12 YIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKK--GVYELRYYNVVVGNDEEE 116          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22L_BOVIN (60S ribosomal protein L22-like 1 OS=Bos taurus GN=RPL22L1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.777e-17
Identity = 48/106 (45.28%), Postives = 64/106 (60.38%), Query Frame = -1
Query:  124 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEE 441
            F +D    VED I D  + E+FL+E++KV GK G LG+ V + R K KI V S+  FS             K+N+RDWLRV+AS  D+  YELRYF I+++E E E
Sbjct:   16 FNLDLTHAVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERFKNKIIVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVAS--DKETYELRYFQISQDEDESE 119          
The following BLAST results are available for this feature:
BLAST of DC887863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL22_TRIGR5.338e-2250.4760S ribosomal protein L22 OS=Tripneustes gratilla ... [more]
RL22_XENTR3.460e-2150.9360S ribosomal protein L22 OS=Xenopus tropicalis GN... [more]
RL22_XENLA3.460e-2150.9360S ribosomal protein L22 OS=Xenopus laevis GN=rpl... [more]
RL22_DROME6.526e-2044.8660S ribosomal protein L22 OS=Drosophila melanogast... [more]
RL22L_XENTR3.239e-1946.3060S ribosomal protein L22-like 1 OS=Xenopus tropic... [more]
RL22_GADMO4.230e-1949.5260S ribosomal protein L22 (Fragment) OS=Gadus morh... [more]
RL22L_HUMAN4.230e-1947.1760S ribosomal protein L22-like 1 OS=Homo sapiens G... [more]
RL22L_MOUSE2.099e-1846.7960S ribosomal protein L22-like 1 OS=Mus musculus G... [more]
RL22_SCHPO1.042e-1745.7960S ribosomal protein L22 OS=Schizosaccharomyces p... [more]
RL22L_BOVIN1.777e-1745.2860S ribosomal protein L22-like 1 OS=Bos taurus GN=... [more]

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Properties
Property NameValue
Genbank descriptionDC887863 EIC Citrus sinensis cDNA clone EIC1015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887863 ID=DC887863; Name=DC887863; organism=Citrus sinensis; type=EST; length=501bp
TGATGTCTCTAAACATTCAAACAAGTCCACAGATTTGATCGCAGGAGAAA
AAAAGAAAAAAGAGCTAGAACAAGTAATCAGAATAGATATAATATGAGGA
AATACTGAAATGGATCTTCAGTCTTCCTCCTCTCCCTCATTCTCAGCAAT
GTTGAAGTATCGCAGCTCATAGACACTTCGGTCCTTGTTTGAAGCAATCA
CTCGGAGCCAATCTCTTACATTGTGTTTCTTCAAGTACTTCTTGGTCAAA
TATTTAAGATACCTCTTAGAGAAGTTGCTGTCAGAAGTGACGGTGATCTT
GGTCTTCTCACGGGTGACGGTAACTGAATCCCCAAGGGCACCAGCCTTGC
CGCCGACCTTGATCCGCTCCTGGAGGAACTTTTCCAAGGACGCAATGTCC
ATGATTTTGTCCTCCACAGGCTTCCCGCAGTCTATCACGAAGGTCGCTCC
CTTTTTCTTCCCCTTCACCCCTGCTGCTGCTGCTCCGCGACTCATTTTCC
C
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