DC887863

Overview
NameDC887863
Unique NameDC887863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL221_DICDI (60S ribosomal protein L22 1 OS=Dictyostelium discoideum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.566e-16
Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = -1
Query:  127 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEE 441
            FVIDC  P   KI+D+A+ EK+L +RIKV  K G LG +V ++++K+KI + +   FS                +RD+LRV+A+ K  + YELRYFNI ++E +E
Sbjct:   15 FVIDCTAPA-GKIVDVAAFEKYLHDRIKVDNKVGNLGSTVVISKDKSKIIINTTIPFSKRYLKYLTKKFLKFKQIRDFLRVVATTK--NTYELRYFNIGDSESQE 116          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL222_DICDI (60S ribosomal protein L22 2 OS=Dictyostelium discoideum GN=rpl22a PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = -1
Query:  127 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEE 441
            FVIDC  P   KI+D+A+ EK+L +RIKV  K   LG +V ++++K+KI + +   FS                +RD+LRV+A+ K  + YELRYFNI ++E +E
Sbjct:   15 FVIDCTAPA-GKIVDVAAFEKYLHDRIKVDNKVSNLGSNVVISKDKSKIIINTTIPFSKRYLKYLTKKFLKFKQIRDFLRVVATTK--NTYELRYFNIGDSESQE 116          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22_CAEEL (60S ribosomal protein L22 OS=Caenorhabditis elegans GN=rpl-22 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14
Identity = 46/106 (43.40%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  127 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGAL-GDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEE 441
            F ++C  PVED I+ I  LE FL E+IKV GK G L  ++V V   K+K++V S+  FS             ++++RDWLRV+A NK  + YE+RYF+I  N+GE+
Sbjct:   23 FNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKVEVAKSKVSVVSEVPFSKRYLKYLTKKYLKRNSLRDWLRVVAVNK--NTYEVRYFHI--NDGED 124          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22A_YEAST (60S ribosomal protein L22-A OS=Saccharomyces cerevisiae GN=RPL22A PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.033e-13
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = -1
Query:  121 TFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 444
            TF +D   P E+ + D AS  K+L + IKV G  G LG++VTVT + T +TV S + FS             K+ +RDW+R +++  +   Y L ++ +   E EEED
Sbjct:   14 TFTVDVSSPTENGVFDPASYAKYLIDHIKVEGAVGNLGNAVTVTEDGTVVTVVSTAKFSGKYLKYLTKKYLKKNQLRDWIRFVSTKTNE--YRLAFYQVTPEEDEEED 119          
The following BLAST results are available for this feature:
BLAST of DC887863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL221_DICDI2.566e-1641.9060S ribosomal protein L22 1 OS=Dictyostelium disco... [more]
RL222_DICDI1.274e-1540.9560S ribosomal protein L22 2 OS=Dictyostelium disco... [more]
RL22_CAEEL1.078e-1443.4060S ribosomal protein L22 OS=Caenorhabditis elegan... [more]
RL22A_YEAST2.033e-1336.1160S ribosomal protein L22-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionDC887863 EIC Citrus sinensis cDNA clone EIC1015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887863 ID=DC887863; Name=DC887863; organism=Citrus sinensis; type=EST; length=501bp
TGATGTCTCTAAACATTCAAACAAGTCCACAGATTTGATCGCAGGAGAAA
AAAAGAAAAAAGAGCTAGAACAAGTAATCAGAATAGATATAATATGAGGA
AATACTGAAATGGATCTTCAGTCTTCCTCCTCTCCCTCATTCTCAGCAAT
GTTGAAGTATCGCAGCTCATAGACACTTCGGTCCTTGTTTGAAGCAATCA
CTCGGAGCCAATCTCTTACATTGTGTTTCTTCAAGTACTTCTTGGTCAAA
TATTTAAGATACCTCTTAGAGAAGTTGCTGTCAGAAGTGACGGTGATCTT
GGTCTTCTCACGGGTGACGGTAACTGAATCCCCAAGGGCACCAGCCTTGC
CGCCGACCTTGATCCGCTCCTGGAGGAACTTTTCCAAGGACGCAATGTCC
ATGATTTTGTCCTCCACAGGCTTCCCGCAGTCTATCACGAAGGTCGCTCC
CTTTTTCTTCCCCTTCACCCCTGCTGCTGCTGCTCCGCGACTCATTTTCC
C
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