CN185429

Overview
NameCN185429
Unique NameCN185429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185429_ssr625 microsatellite CN185429_ssr625:625..636. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2478 contig Csv1_Contig2478:76..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185429 vs. ExPASy Swiss-Prot
Match: NHP2_BOVIN (H/ACA ribonucleoprotein complex subunit 2 OS=Bos taurus GN=NHP2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 38/106 (35.85%), Postives = 55/106 (51.89%), Query Frame = 2
Query:   74 VNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 391
            +NP A PLA   LT  +   +++A   KQ+++G  E  K +N+G    +V+A DT             ED+N+PYV++PSK  LG A G  RP     V  +E  Q
Sbjct:   31 LNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFINKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMVKPHEEYQ 136          
BLAST of CN185429 vs. ExPASy Swiss-Prot
Match: NHP2_HUMAN (H/ACA ribonucleoprotein complex subunit 2 OS=Homo sapiens GN=NHP2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13
Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 2
Query:   77 NPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 391
            NP A PLA   LT  +   +++A   KQ+++G  E  K +N+G    +V+A DT             ED+N+PYV++PSK  LG A G  RP     V  +E  Q
Sbjct:   32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMVKPHEEYQ 136          
BLAST of CN185429 vs. ExPASy Swiss-Prot
Match: NHP2_MOUSE (H/ACA ribonucleoprotein complex subunit 2 OS=Mus musculus GN=Nhp2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.045e-12
Identity = 38/106 (35.85%), Postives = 55/106 (51.89%), Query Frame = 2
Query:   74 VNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 391
            +NP A PLA   LT  +   +++A   KQ+++G  E  K +N+G    +V+A DT             ED+N+PYV++PSK  LG A G  RP     V  +E  Q
Sbjct:   31 LNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVLCEDQNLPYVYIPSKTDLGAATGSKRPTCVIMVKPHEEYQ 136          
BLAST of CN185429 vs. ExPASy Swiss-Prot
Match: RL7A_SULTO (50S ribosomal protein L7Ae OS=Sulfolobus tokodaii GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 38/110 (34.55%), Postives = 61/110 (55.45%), Query Frame = 2
Query:  107 NLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKL 436
            +L   +LD V++A    ++KKG NE TK + RG ++ +V+A D              E+K +PYV+VPSK+ALG ACG+   V A S    +  + K  + ++   +E+L
Sbjct:   14 DLANKVLDAVRKAKESGKIKKGTNETTKAVERGQAKLVVIATDVQPEEIVAHLPLLCEEKKIPYVYVPSKKALGEACGL--QVAAASAAIIDPGEAKDLLDEIVKRVEEL 121          
BLAST of CN185429 vs. ExPASy Swiss-Prot
Match: NHP2_PONAB (H/ACA ribonucleoprotein complex subunit 2 OS=Pongo abelii GN=NHP2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 37/105 (35.24%), Postives = 54/105 (51.43%), Query Frame = 2
Query:   77 NPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 391
            NP A PLA   LT  +   +++A   KQ+++G  E  K +N+G    +V+A DT             ED+N+PYV++PSK  LG A G  RP     V  ++  Q
Sbjct:   32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMVKPHDEYQ 136          
BLAST of CN185429 vs. ExPASy Swiss-Prot
Match: NHP2_YEAST (H/ACA ribonucleoprotein complex subunit 2 OS=Saccharomyces cerevisiae GN=NHP2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 41/125 (32.80%), Postives = 63/125 (50.40%), Query Frame = 2
Query:   71 AVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRP--VIACSVTSNEASQLKTQIQQLKDAIEKLL 439
            AV P A PLA   L   +L  V++A+  K +K+G  E  K L +G    +V+A D              ED +VPY+F+PSKQ LG A    RP  V+     SN+    K + ++ K++  +++
Sbjct:   26 AVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVV 150          
BLAST of CN185429 vs. ExPASy Swiss-Prot
Match: NHP2_XENLA (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus laevis GN=nhp2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 37/106 (34.91%), Postives = 52/106 (49.06%), Query Frame = 2
Query:   74 VNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 391
            +NP A PLA   LT  +   V++A   K +++G  E  K +N+G    +VMA DT             ED+ +PY +VPSK  LG A G  RP     +  +E  Q
Sbjct:   27 LNPVAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILIKPHEDYQ 132          
BLAST of CN185429 vs. ExPASy Swiss-Prot
Match: NHP2_XENTR (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus tropicalis GN=nhp2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 37/106 (34.91%), Postives = 52/106 (49.06%), Query Frame = 2
Query:   74 VNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 391
            +NP A PLA   LT  +   V++A   K +++G  E  K +N+G    +VMA DT             ED+ +PY +VPSK  LG A G  RP     +  +E  Q
Sbjct:   27 LNPIAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILIKPHEDYQ 132          
BLAST of CN185429 vs. ExPASy Swiss-Prot
Match: NHP2_ARATH (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 46/147 (31.29%), Postives = 67/147 (45.58%), Query Frame = 2
Query:   23 TKTLASVPATTKMTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSV---------TSNEASQLKTQIQQLKDAIEKL 436
            T+   S+    K     + P A PLA   L      L+Q+AA  K LK+G  E  K++ RG     V+A +              E+  VPYV+VPSK+ L +A    RP     V         T+ E ++LKT  +Q+ D I++L
Sbjct:    5 TEAEKSIQKEKKKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKEL 151          
BLAST of CN185429 vs. ExPASy Swiss-Prot
Match: NHP2_DANRE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio rerio GN=nhp2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.575e-11
Identity = 34/103 (33.01%), Postives = 54/103 (52.43%), Query Frame = 2
Query:   74 VNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNE 382
            +NP A PLA   L+  +   V++AA  KQ+++G  E  K +N+G +  +V A DT             ED+++PY +VPSK  LG + G  RP     +  ++
Sbjct:   28 INPIANPLASRKLSKKLYKCVKKAAKVKQIRRGVKEVQKFINKGETGIVVFAGDTLPIDVYCHLPIMCEDRSLPYAYVPSKVDLGSSAGSKRPTCVIMIKPHD 130          
The following BLAST results are available for this feature:
BLAST of CN185429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
NHP2_BOVIN4.693e-1335.85H/ACA ribonucleoprotein complex subunit 2 OS=Bos t... [more]
NHP2_HUMAN8.005e-1336.19H/ACA ribonucleoprotein complex subunit 2 OS=Homo ... [more]
NHP2_MOUSE1.045e-1235.85H/ACA ribonucleoprotein complex subunit 2 OS=Mus m... [more]
RL7A_SULTO1.783e-1234.5550S ribosomal protein L7Ae OS=Sulfolobus tokodaii ... [more]
NHP2_PONAB1.783e-1235.24H/ACA ribonucleoprotein complex subunit 2 OS=Pongo... [more]
NHP2_YEAST1.156e-1132.80H/ACA ribonucleoprotein complex subunit 2 OS=Sacch... [more]
NHP2_XENLA1.156e-1134.91H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_XENTR1.510e-1134.91H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_ARATH1.972e-1131.29H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_DANRE2.575e-1133.01H/ACA ribonucleoprotein complex subunit 2-like pro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001F04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185429 ID=CN185429; Name=CN185429; organism=Citrus sinensis; type=EST; length=655bp
ATGGTACGCTTCATTAGCTGCCACAAAAACCCTAGCCTCCGTCCCCGCCA
CCACGAAAATGACAGGAGAAGCAGTGAACCCTAAAGCTTACCCGCTAGCA
GATTCTAATCTCACAATCACGATACTGGATCTCGTTCAGCAAGCTGCCAA
TTACAAGCAGCTCAAAAAGGGCGCCAATGAAGCTACTAAGACTCTTAACA
GAGGTATCTCCGAGTTTATTGTGATGGCTGCTGATACCGAGCCTCTGGAG
ATTCTTCTTCATCTTCCACTGCTTGCAGAGGACAAGAATGTTCCCTATGT
TTTTGTCCCTTCAAAGCAGGCTCTTGGCAGGGCATGTGGGGTCACAAGAC
CTGTCATTGCTTGCTCTGTGACCTCAAATGAGGCGAGTCAGTTGAAGACT
CAAATTCAACAGCTGAAGGATGCCATTGAGAAGCTCTTGATATGAATATA
ATGGGATTCATATTCGGTGTGATGGGCCTCTTTGATGGTGGTTAGAGGCT
TTGACTGATGGTGTAGTTGTGCTGCTTGGAAATCTTCTATTATTAATCTT
TGTATTTTTGTCTTTTATGTTTTCTTGTCATGCATTATGGGAAAGCTTTT
GGAATCATATTTACCAGAACCTGCAATGAATGAATGATGCTACAAACAAA
AAAAA
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