CN185428

Overview
NameCN185428
Unique NameCN185428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185428 vs. ExPASy Swiss-Prot
Match: NHP2_BRABE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 36/106 (33.96%), Postives = 54/106 (50.94%), Query Frame = -2
Query:  271 VNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 588
            VNP A PLA   LT  +   V++A+  K ++KG  +  K + +G    +++A DT           + ED  +PY +VP+KQ LG A G  RP     +  NE+ Q
Sbjct:   37 VNPIASPLAARKLTKRLYKTVKKASKEKNIRKGIRDVQKFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVLLKPNESYQ 142          
BLAST of CN185428 vs. ExPASy Swiss-Prot
Match: RL7A_SULAC (50S ribosomal protein L7Ae OS=Sulfolobus acidocaldarius GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 34/105 (32.38%), Postives = 60/105 (57.14%), Query Frame = -2
Query:  226 ILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKL 540
            +L+ V++A +  ++KKG NE TK + R  ++ +V+A D            L E+K +PYV+VPSK++LG ACG+   V A SV   +  + K  + ++   + ++
Sbjct:   19 VLEAVKKAKDSGKIKKGTNETTKAVERSQAKLVVIAEDVQPEEIVAHLPLLCEEKKIPYVYVPSKKSLGEACGL--QVAAASVALMDPGEAKDLVDEIVKRVNEI 121          
BLAST of CN185428 vs. ExPASy Swiss-Prot
Match: RL7A_AERPE (50S ribosomal protein L7Ae OS=Aeropyrum pernix GN=rpl7ae PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 34/103 (33.01%), Postives = 60/103 (58.25%), Query Frame = -2
Query:  226 DLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKL 534
            + V++A    ++KKG NE TK + RG+++ +V+A D            L ++K +PYV+VPSK+ LG A G+   V A SV   E    +T ++++ + +++L
Sbjct:   21 EAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGI--EVAAASVAIIEPGDAETLVREIVEKVKEL 121          
The following BLAST results are available for this feature:
BLAST of CN185428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
NHP2_BRABE5.767e-1133.96H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
RL7A_SULAC9.836e-1132.3850S ribosomal protein L7Ae OS=Sulfolobus acidocald... [more]
RL7A_AERPE9.836e-1133.0150S ribosomal protein L7Ae OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001F04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185428 ID=CN185428; Name=CN185428; organism=Citrus sinensis; type=EST; length=661bp
CCCCTTTTTTTTTTGTTTGTAGCATCATTCATTCATTGCAGGTTCTGGTA
AATATGACTCTAAAAGCCTTCCCATAATGCATGACAAGAAAACATAACCT
TCAAAAATACAAAGATTAATAATAGAAGATTTCCAAGCAGCACAACTACA
CCATCAGTCAAAGCCTCTAACCACCATCAAAGAGGCCCATCACACCGAAT
ATGAATCCCATTATATTCATATCAAGAGCTTCTCAATGGCATCCTTCAGC
TGTTGAATTTGAGTCTTCAACTGACTCGCCTCATTTGAGGTCACAGAGCA
AGCAATGACAGGTCTTGTGACCCCACATGCCCTGCCAAGAGCCTGCTTTG
AAGGGACAAAAACATAGGGAACATTCTTGTCCTCTGCAAGCAGTGGAAGA
TGAAGAAGAATCTCCAGAGGCTCGGTATCAGCAGCCATCACAATAAACTC
GGAGATACCTCTGTTAAGAGTCTTAGTAGCTTCATTGGCGCCCTTTTTGA
GCTGCTTGTAATTGGCAGCTTGCTGAACGAGATCCAGTATCGTGATTGTG
AGATTAGAATCTGCTAGCGGGTAAGCTTTAGGGTTCACTGCTTCTCCTGT
CATTTTCGTGGTGGCGGGGACGGAGGCTAGGGTTTTTGTGGCAGCTAATG
AAGCGTACCCT
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