DC887856
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 1.538e-49 Identity = 90/204 (44.12%), Postives = 143/204 (70.10%), Query Frame = -1 Query: 5 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE-----TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 601 +D+ +EP +VWG+LLG+CR+H + ++ A+ +LF+L P +G YVLL+++YA A W+EV ++ +++++GL+K PG S +EV R +++F+ D +PQ ++++ L L +MKE GYVP ++ L+D++ E+KE + HSEKLA+ F L+NT + E TIRITKNLR+C DCH K IS+ ++EI++RD NRFH Sbjct: 470 QDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFH 673
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 1.538e-49 Identity = 92/198 (46.46%), Postives = 136/198 (68.69%), Query Frame = -1 Query: 5 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 598 D+ + P VWG+LL CR+ + +LAE K L LEP NAGNYV L+++Y+ WDE V+ ++ +G++K+PG S IE++ K++ F++ D+ +P ++++A L +L EM+ G+VP T+ V +D++ EEKER++ HSEKLAVA GLI+T G+ IR+ KNLR+C DCH K ISK +EI+VRD NRFH Sbjct: 475 DMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFH 672
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 2.009e-49 Identity = 92/200 (46.00%), Postives = 139/200 (69.50%), Query Frame = -1 Query: 2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601 ED+ +EP +W SLL +CR+ NVE+A A++++ L P G+YVLL++VYA+A W+++ +V+ ++ +GL+K PG S I+++ K + F S DE +P+ + A+L +S G+VP VL D+D +EK ++ HSEKLA+A+GLI+++KG TIRI KNLR+C DCHSF KF SK N+EI++RD NRFH+ Sbjct: 631 EDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHY 830
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 4.947e-48 Identity = 92/200 (46.00%), Postives = 135/200 (67.50%), Query Frame = -1 Query: 2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601 E + IEPG VW +LLG+CRIH + LA S++LFEL+P N G +VLL+++++A + + V++ + R L K PG + IE+ + F S D+ +PQ ++++ L L +M+E GY P+T++ L+D++ EE+E +V HSE+LA+AFGLI T G IRI KNLR+C DCH+ TK ISK + I+VRD NRFHH Sbjct: 581 EAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHH 780
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.439e-47 Identity = 92/200 (46.00%), Postives = 135/200 (67.50%), Query Frame = -1 Query: 2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601 E + IEP WGSLL +CR+H N++L + A++RL LEP N+G Y LA++Y+A W+E ++++ ++ ++K G S IEVK K++ F D +P+ +++ + + E+K+ GYVP T VL+DL+ E KE+I+ HSEKLA+AFGLI+T T+RI KNLR+C DCH+ KFISK +EI+VRD RFHH Sbjct: 575 EKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHH 774
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 5.470e-47 Identity = 86/198 (43.43%), Postives = 134/198 (67.68%), Query Frame = -1 Query: 2 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 595 + +EP +W SLL +C++H NVEL E ++ L ++EP N G+YVLL+++YA+A W+EV + + LL +G++KVPG S IE+ ++ F+ D+F+P+ +++ +L + +++ G+VP T VL +++ E KE + HSEKLA+AFGLI+T G + I KNLR+C +CH TK ISK +EI+ RD RFHH Sbjct: 532 MEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHH 729
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2) HSP 1 Score: 186.808 bits (473), Expect = 7.144e-47 Identity = 93/200 (46.50%), Postives = 132/200 (66.00%), Query Frame = -1 Query: 2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601 E++ E +W SLL SCRIH N+E+ E+ + +LFELEP NYVLL+++YA W++V++V++ + L+K G S IE+ RK++SFV + F FE++ +L L ++ + GY P T V +DL EEK + GHSEKLA+ +GLI TS+G TIR+ KNLR+C DCH+ K ISK +EI+VRD RFHH Sbjct: 759 EEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHH 958
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 7.144e-47 Identity = 86/196 (43.88%), Postives = 138/196 (70.41%), Query Frame = -1 Query: 2 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 589 ++PG VWG+LL +C+ H +VEL E A+++LF ++P+N G+YV L+++YAAA +WD V V+ ++ +GL K G S +EV+ ++ +F D+ +P++E++ + + + +KE G+V L+DL+ EE E + HSE++A+A+GLI+T +G +RITKNLR C +CH+ TK ISK ++EI+VRD NRFHH Sbjct: 487 VQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHH 682
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2) HSP 1 Score: 186.037 bits (471), Expect = 1.219e-46 Identity = 92/199 (46.23%), Postives = 136/199 (68.34%), Query Frame = -1 Query: 2 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV-KRLLEARGLQ----KVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 583 P V+G+LLG+CR+H NVELAE A+++L +L NA YV LA++YA+ + W++V RV KR+ E+ ++ KVPG S IE++ K++ F S D +P+ + +H L L +MK GY P+ + L++++ E+KE+++L HSEKLAVAFG I +G I++ KNLR+C DCH KFIS+ +EI+VRD RFHH Sbjct: 451 PHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVERVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHH 649
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP353_ARATH (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=2 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 2.079e-46 Identity = 85/198 (42.93%), Postives = 133/198 (67.17%), Query Frame = -1 Query: 5 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 598 ++ ++P +W S+LG C + N++LAE A++ LF++EP N YV +A++YAAA W+E ++++ ++ G+ K PG S E+KRK + F++ D +P + Q+ L L +MKE+GYVP T +VL+D++ E+KE ++ HSEKLAVAF +++T +G I++ KNLR C DCH KFIS ++I VRD RFH Sbjct: 481 EMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFH 678 The following BLAST results are available for this feature:
BLAST of DC887856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887856 ID=DC887856; Name=DC887856; organism=Citrus sinensis; type=EST; length=601bpback to top |