DC887856

Overview
NameDC887856
Unique NameDC887856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.538e-49
Identity = 90/204 (44.12%), Postives = 143/204 (70.10%), Query Frame = -1
Query:    5 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGE-----TIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 601
            +D+ +EP  +VWG+LLG+CR+H + ++   A+ +LF+L P  +G YVLL+++YA A  W+EV  ++ +++++GL+K PG S +EV R +++F+  D  +PQ ++++  L  L  +MKE GYVP ++  L+D++ E+KE  +  HSEKLA+ F L+NT + E     TIRITKNLR+C DCH   K IS+  ++EI++RD NRFH
Sbjct:  470 QDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFH 673          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.538e-49
Identity = 92/198 (46.46%), Postives = 136/198 (68.69%), Query Frame = -1
Query:    5 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 598
            D+ + P   VWG+LL  CR+  + +LAE   K L  LEP NAGNYV L+++Y+    WDE   V+ ++  +G++K+PG S IE++ K++ F++ D+ +P  ++++A L +L  EM+  G+VP T+ V +D++ EEKER++  HSEKLAVA GLI+T  G+ IR+ KNLR+C DCH   K ISK   +EI+VRD NRFH
Sbjct:  475 DMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFH 672          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.009e-49
Identity = 92/200 (46.00%), Postives = 139/200 (69.50%), Query Frame = -1
Query:    2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601
            ED+ +EP   +W SLL +CR+  NVE+A  A++++  L P   G+YVLL++VYA+A  W+++ +V+  ++ +GL+K PG S I+++ K + F S DE +P+   + A+L  +S      G+VP    VL D+D +EK  ++  HSEKLA+A+GLI+++KG TIRI KNLR+C DCHSF KF SK  N+EI++RD NRFH+
Sbjct:  631 EDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHY 830          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.947e-48
Identity = 92/200 (46.00%), Postives = 135/200 (67.50%), Query Frame = -1
Query:    2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601
            E + IEPG  VW +LLG+CRIH +  LA   S++LFEL+P N G +VLL+++++A   + +   V++  + R L K PG + IE+    + F S D+ +PQ ++++  L  L  +M+E GY P+T++ L+D++ EE+E +V  HSE+LA+AFGLI T  G  IRI KNLR+C DCH+ TK ISK   + I+VRD NRFHH
Sbjct:  581 EAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHH 780          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.439e-47
Identity = 92/200 (46.00%), Postives = 135/200 (67.50%), Query Frame = -1
Query:    2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601
            E + IEP    WGSLL +CR+H N++L + A++RL  LEP N+G Y  LA++Y+A   W+E  ++++ ++   ++K  G S IEVK K++ F   D  +P+  +++  +  +  E+K+ GYVP T  VL+DL+ E KE+I+  HSEKLA+AFGLI+T    T+RI KNLR+C DCH+  KFISK   +EI+VRD  RFHH
Sbjct:  575 EKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHH 774          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.470e-47
Identity = 86/198 (43.43%), Postives = 134/198 (67.68%), Query Frame = -1
Query:    2 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 595
            + +EP   +W SLL +C++H NVEL E  ++ L ++EP N G+YVLL+++YA+A  W+EV + + LL  +G++KVPG S IE+   ++ F+  D+F+P+  +++ +L  +   +++ G+VP T  VL +++ E KE  +  HSEKLA+AFGLI+T  G  + I KNLR+C +CH  TK ISK   +EI+ RD  RFHH
Sbjct:  532 MEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHH 729          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 7.144e-47
Identity = 93/200 (46.50%), Postives = 132/200 (66.00%), Query Frame = -1
Query:    2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601
            E++  E    +W SLL SCRIH N+E+ E+ + +LFELEP    NYVLL+++YA    W++V++V++ +    L+K  G S IE+ RK++SFV  + F   FE++ +L   L  ++ + GY P T  V +DL  EEK   + GHSEKLA+ +GLI TS+G TIR+ KNLR+C DCH+  K ISK   +EI+VRD  RFHH
Sbjct:  759 EEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHH 958          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.144e-47
Identity = 86/196 (43.88%), Postives = 138/196 (70.41%), Query Frame = -1
Query:    2 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 589
            ++PG  VWG+LL +C+ H +VEL E A+++LF ++P+N G+YV L+++YAAA +WD V  V+  ++ +GL K  G S +EV+ ++ +F   D+ +P++E++   +  + + +KE G+V      L+DL+ EE E  +  HSE++A+A+GLI+T +G  +RITKNLR C +CH+ TK ISK  ++EI+VRD NRFHH
Sbjct:  487 VQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHH 682          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.219e-46
Identity = 92/199 (46.23%), Postives = 136/199 (68.34%), Query Frame = -1
Query:    2 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV-KRLLEARGLQ----KVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 583
            P   V+G+LLG+CR+H NVELAE A+++L +L   NA  YV LA++YA+ + W++V RV KR+ E+  ++    KVPG S IE++ K++ F S D  +P+ + +H  L  L  +MK  GY P+ +  L++++ E+KE+++L HSEKLAVAFG I   +G  I++ KNLR+C DCH   KFIS+   +EI+VRD  RFHH
Sbjct:  451 PHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVERVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHH 649          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP353_ARATH (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.079e-46
Identity = 85/198 (42.93%), Postives = 133/198 (67.17%), Query Frame = -1
Query:    5 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 598
            ++ ++P   +W S+LG C  + N++LAE A++ LF++EP N   YV +A++YAAA  W+E  ++++ ++  G+ K PG S  E+KRK + F++ D  +P + Q+   L  L  +MKE+GYVP T +VL+D++ E+KE  ++ HSEKLAVAF +++T +G  I++ KNLR C DCH   KFIS    ++I VRD  RFH
Sbjct:  481 EMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFH 678          
The following BLAST results are available for this feature:
BLAST of DC887856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
PP271_ARATH1.538e-4944.12Putative pentatricopeptide repeat-containing prote... [more]
PP219_ARATH1.538e-4946.46Putative pentatricopeptide repeat-containing prote... [more]
PP249_ARATH2.009e-4946.00Pentatricopeptide repeat-containing protein At3g22... [more]
PP341_ARATH4.947e-4846.00Pentatricopeptide repeat-containing protein At4g30... [more]
PP168_ARATH1.439e-4746.00Pentatricopeptide repeat-containing protein At2g22... [more]
PPR21_ARATH5.470e-4743.43Pentatricopeptide repeat-containing protein At1g08... [more]
PPR48_ARATH7.144e-4746.50Pentatricopeptide repeat-containing protein At1g18... [more]
PP224_ARATH7.144e-4743.88Pentatricopeptide repeat-containing protein At3g12... [more]
PP316_ARATH1.219e-4646.23Pentatricopeptide repeat-containing protein At4g16... [more]
PP353_ARATH2.079e-4642.93Pentatricopeptide repeat-containing protein At4g37... [more]

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Properties
Property NameValue
Genbank descriptionDC887856 EIC Citrus sinensis cDNA clone EIC1003 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887856 ID=DC887856; Name=DC887856; organism=Citrus sinensis; type=EST; length=601bp
AATGGTGAAACCGGTTAACATCGCGAACCAGAATCTCTTTATTGGCAAAC
TTGGAAATGAATTTTGTAAAAGAATGGCAATCCTCACATAACCTCAAGTT
CTTTGTGATCCGAATTGTCTCCCCTTTGCTAGTGTTTATGAGTCCAAAAG
CAACTGCTAGTTTTTCGCTATGGCCTAATACAATACGTTCCTTTTCTTCT
GCATCAAGGTCGTAAAGCACAACTTTGGTTTGTGGCACATAGCCCTTCTC
CTTCATCTCGGCTGACAGATTGATTAACAGTGCATGCAGCTGTTCAAACT
GCGGGTTGAACTCATCAACGGACACAAATGAGTACATTTTCCTCTTAACT
TCAATCCTACTTCGACCTGGGACTTTCTGCAGACCCCTTGCTTCAAGAAG
CCTTTTCACTCTTTTTACCTCATCCCACATATCAGCTGCTGCATATACAT
CAGCTAGAAGTACATAATTCCCTGCATTTGTAGGCTCAAGCTCAAAAAGC
CTTTTGCTTGCTCTCTCAGCAAGCTCAACATTACAATGAATCCGACACGA
TCCAAGCAATGAACCCCAAACCTTAGGTCCCGGTTCAATTCTCAAATCTT
C
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