DC887856

Overview
NameDC887856
Unique NameDC887856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PPR24_ARATH (Pentatricopeptide repeat-containing protein At1g09220, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E25 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.171e-11
Identity = 28/82 (34.15%), Postives = 56/82 (68.29%), Query Frame = -1
Query:  353 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRI 598
            ++ IE    VW  LLG+C ++ + ELAER +++L ELE ++ G+YVL+++++     + + +R ++ ++ RG+ K+PG S++
Sbjct:  422 EIPIEEKAVVWRMLLGACSVYDDAELAERVTRKLMELERSHGGDYVLMSNIFCGTGRFLDAQRFRKQMDVRGVAKLPGHSQV 503          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP214_ARATH (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 30/80 (37.50%), Postives = 50/80 (62.50%), Query Frame = -1
Query:  350 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIE 589
            ++P   +WG+LL  C IH N+EL +R    + E E   +G YVLL+++YA A  W +VK ++  ++++ + KV G S +E
Sbjct:  483 VKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRVDKVLGHSSVE 562          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP148_ARATH (Pentatricopeptide repeat-containing protein At2g04860 OS=Arabidopsis thaliana GN=PCMP-E74 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = -1
Query:  353 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRI 589
            I+P   VWG+LL +C IH  +E+ E  ++++F L+  N G YVL++++YA   MWD+V RV+ +++  G     G S+I
Sbjct:  564 IKPDSAVWGALLSACIIHRELEVGEYVARKMFMLDYKNGGLYVLMSNLYATEAMWDDVVRVRNMMKDNGYDGYLGVSQI 642          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP146_ARATH (Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 29/84 (34.52%), Postives = 52/84 (61.90%), Query Frame = -1
Query:  350 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIE 601
            E + I+P  + +G+ L  C +H   +L E   K++ +L P +A  YVL++++YA+   W++ K V+ L++ RGL K+ G S +E
Sbjct:  606 EKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKIAGHSTME 689          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PPR88_ARATH (Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 32/79 (40.51%), Postives = 52/79 (65.82%), Query Frame = -1
Query:  350 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIE 586
            EP   VWG+LL +CRI+ NV LA  A++ +  LEP ++  YVLL ++YA   +WDE  +V+  +E++ ++K  G S ++
Sbjct:  575 EPDKTVWGALLDACRIYNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMESKRIKKERGSSWVD 653          
The following BLAST results are available for this feature:
BLAST of DC887856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
PPR24_ARATH2.171e-1134.15Pentatricopeptide repeat-containing protein At1g09... [more]
PP214_ARATH2.836e-1137.50Putative pentatricopeptide repeat-containing prote... [more]
PP148_ARATH2.836e-1139.24Pentatricopeptide repeat-containing protein At2g04... [more]
PP146_ARATH4.837e-1134.52Pentatricopeptide repeat-containing protein At2g03... [more]
PPR88_ARATH6.317e-1140.51Pentatricopeptide repeat-containing protein At1g62... [more]

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Properties
Property NameValue
Genbank descriptionDC887856 EIC Citrus sinensis cDNA clone EIC1003 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887856 ID=DC887856; Name=DC887856; organism=Citrus sinensis; type=EST; length=601bp
AATGGTGAAACCGGTTAACATCGCGAACCAGAATCTCTTTATTGGCAAAC
TTGGAAATGAATTTTGTAAAAGAATGGCAATCCTCACATAACCTCAAGTT
CTTTGTGATCCGAATTGTCTCCCCTTTGCTAGTGTTTATGAGTCCAAAAG
CAACTGCTAGTTTTTCGCTATGGCCTAATACAATACGTTCCTTTTCTTCT
GCATCAAGGTCGTAAAGCACAACTTTGGTTTGTGGCACATAGCCCTTCTC
CTTCATCTCGGCTGACAGATTGATTAACAGTGCATGCAGCTGTTCAAACT
GCGGGTTGAACTCATCAACGGACACAAATGAGTACATTTTCCTCTTAACT
TCAATCCTACTTCGACCTGGGACTTTCTGCAGACCCCTTGCTTCAAGAAG
CCTTTTCACTCTTTTTACCTCATCCCACATATCAGCTGCTGCATATACAT
CAGCTAGAAGTACATAATTCCCTGCATTTGTAGGCTCAAGCTCAAAAAGC
CTTTTGCTTGCTCTCTCAGCAAGCTCAACATTACAATGAATCCGACACGA
TCCAAGCAATGAACCCCAAACCTTAGGTCCCGGTTCAATTCTCAAATCTT
C
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