DC887856
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 9.352e-39 Identity = 78/188 (41.49%), Postives = 123/188 (65.43%), Query Frame = -1 Query: 5 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 568 W +LL +CR N+E+ + A++ L EL+P + Y LL+ +YA+ WD V +++R + + ++K PG+S I+ K K++SF + DE +P +Q++A L L+ ++ + GY P T V +D++ K +++ HSE+LA+AFGLI G+ IR+ KNLR+C DCH+ TK IS +EILVRD RFH Sbjct: 543 WTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFH 730
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.221e-38 Identity = 83/192 (43.23%), Postives = 122/192 (63.54%), Query Frame = -1 Query: 2 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 577 P +W ++LG+C++H N +L +KRL LEP N G++V+L+++YA + DEV ++ + L+K G S IEV+ K Y F DE + + +++ L L + KE GY P ++ V++ ++ EEKE + HSEKLAVAFGL+ T I I KNLR+CEDCHS K+IS +N++I VRD RFHH Sbjct: 381 PALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKT-VDVAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHH 571
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 8.753e-37 Identity = 74/203 (36.45%), Postives = 126/203 (62.07%), Query Frame = -1 Query: 2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI---VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601 E + +EP VWG+LLG+C+IH NV++AE A ++ E EP N G YVL++++Y+ + + + R++ ++ R +K PG S +E K +++ F++ D + Q E++H +L L + E + ++D + E + HSE+LA+AFG++N+ G I + KNLR+CEDCH F K +SK +++ +VRD +RFH+ Sbjct: 418 ESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVME---------LAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHY 611
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP406_ARATH (Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 3.326e-36 Identity = 70/189 (37.04%), Postives = 121/189 (64.02%), Query Frame = -1 Query: 2 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 568 W +LL +C + N L ++ ++ E P ++G YVLL++++A + W+ V +V+ L+ RG++K PG S I ++ + + F++ D +P+ ++A + + +++K GY P +D+D E++E + HSEKLAVA+GLI T + + +TKN+R+C+DCHS K ISK + + I++RD NRFHH Sbjct: 510 WRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVKEVMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNRFHH 698
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP386_ARATH (Pentatricopeptide repeat-containing protein At5g15340, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 7.410e-36 Identity = 77/200 (38.50%), Postives = 118/200 (59.00%), Query Frame = -1 Query: 5 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTK--VVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 598 ++ + P V GSLLGSC +H VE+AER + L ++ P N +L++++Y A D ++ L RG++K+PG S I V ++ F S D +P+ ++++ L + ++ GYVP V + D EEKE+ + HSEKLAV FGL+ T + + KNLR+C DCHS K +SK ++EI++RD NRFH Sbjct: 411 EMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFH 610
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2) HSP 1 Score: 150.214 bits (378), Expect = 7.410e-36 Identity = 69/200 (34.50%), Postives = 125/200 (62.50%), Query Frame = -1 Query: 2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601 + + ++P +WG+ L SC+IH ++ELAE A KRL LEP N+ NY+++ ++Y+ + W++V+R++ L+ ++ S I++ + ++ F + + +P ++ L L +EMK+ GYVP T + D+ EKE++++GH+EKLA+ +GLI IR+ KN +C D H+ K++S N+EI++++ R HH Sbjct: 557 QTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEGDIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLAMTYGLIKKKGLAPIRVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHH 756
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP446_ARATH (Pentatricopeptide repeat-containing protein At5g65570 OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.264e-35 Identity = 75/197 (38.07%), Postives = 123/197 (62.44%), Query Frame = -1 Query: 2 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEF-NPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 589 I P +W +LL +C++H VE+AER ++++ E+EP + G +L++++YA+ W+ V +K ++ L+K P S +E+ ++ ++F++ D F +P EQ+ L L + K+ GYV V D++ KER + HSEKLA+AF + + G +IRI KNLR+C DCHS+ K +S+ +EI+ RD RFHH Sbjct: 531 INPDLVLWRTLLSACKVHRKVEMAERITRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHTFMAGDLFSHPNSEQILENLEELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFA-VWRNVGGSIRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHH 726
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP308_ARATH (Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2 SV=3) HSP 1 Score: 146.362 bits (368), Expect = 1.070e-34 Identity = 75/198 (37.88%), Postives = 118/198 (59.60%), Query Frame = -1 Query: 2 PGPKVWGSLLGSCRIHCNVELAERASKRL---FELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMK-EKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 583 P W +LL +C+ ++ R + L F+L+ + Y+LL+++YA+A +W +V +R L ++K PG S +EV+++ F + + +P E + LL L EM+ GYVP T +L+D+D +EKE+++ HSE+ AVA+GL+ G IRI KNLR+C DCH K IS+ +EI+VRD R+HH Sbjct: 405 PDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLK--DPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHH 600
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP428_ARATH (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2) HSP 1 Score: 144.821 bits (364), Expect = 3.113e-34 Identity = 74/199 (37.19%), Postives = 124/199 (62.31%), Query Frame = -1 Query: 5 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 601 E + IEP +W SLL S R + N EL E A + L + + +G+YVLL+++Y++ W+ ++V+ L+ G++K G+S +E ++ F + D + + + ++ +L L + K +G+V T +VL D+ EEKE + HSEKLA+A+ ++ +S G IRI KN+R+C DCH++ K +SK N+ I++RD RFH Sbjct: 326 ESMPIEPDVVIWRSLLSSSRTYKNPELGEIAIQNLSKAK---SGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFH 521
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.018e-33 Identity = 71/194 (36.60%), Postives = 121/194 (62.37%), Query Frame = -1 Query: 2 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFE----QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 571 +W +LL +CR+ N+EL +++L+ + P GNYV++ ++Y + E V LE++GL +P + +EV + +SF+S D F+ E Q++ + L E+ E GY + + +L D+D +E+ER+ HSEKLA+A+GL+NT + ++IT+N R+C++CH +FIS +E++VRD +RFHH Sbjct: 496 MWAALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSMGKTAEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNETVKRQIYQKVDELMEEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRICKNCHKVVEFISLVTGREMVVRDASRFHH 689 The following BLAST results are available for this feature:
BLAST of DC887856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887856 ID=DC887856; Name=DC887856; organism=Citrus sinensis; type=EST; length=601bpback to top |