DC887856

Overview
NameDC887856
Unique NameDC887856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.352e-39
Identity = 78/188 (41.49%), Postives = 123/188 (65.43%), Query Frame = -1
Query:    5 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 568
            W +LL +CR   N+E+ + A++ L EL+P +   Y LL+ +YA+   WD V +++R +  + ++K PG+S I+ K K++SF + DE +P  +Q++A L  L+ ++ + GY P T  V +D++   K +++  HSE+LA+AFGLI    G+ IR+ KNLR+C DCH+ TK IS    +EILVRD  RFH
Sbjct:  543 WTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFH 730          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.221e-38
Identity = 83/192 (43.23%), Postives = 122/192 (63.54%), Query Frame = -1
Query:    2 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 577
            P +W ++LG+C++H N +L    +KRL  LEP N G++V+L+++YA +   DEV  ++  +    L+K  G S IEV+ K Y F   DE + +  +++  L  L +  KE GY P ++ V++ ++ EEKE  +  HSEKLAVAFGL+ T     I I KNLR+CEDCHS  K+IS  +N++I VRD  RFHH
Sbjct:  381 PALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKT-VDVAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHH 571          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 8.753e-37
Identity = 74/203 (36.45%), Postives = 126/203 (62.07%), Query Frame = -1
Query:    2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERI---VLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601
            E + +EP   VWG+LLG+C+IH NV++AE A  ++ E EP N G YVL++++Y+ +   + + R++ ++  R  +K PG S +E K +++ F++ D  + Q E++H +L  L   + E         +  ++D +  E +      HSE+LA+AFG++N+  G  I + KNLR+CEDCH F K +SK  +++ +VRD +RFH+
Sbjct:  418 ESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVME---------LAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHY 611          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP406_ARATH (Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.326e-36
Identity = 70/189 (37.04%), Postives = 121/189 (64.02%), Query Frame = -1
Query:    2 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 568
            W +LL +C +  N  L ++ ++   E  P ++G YVLL++++A +  W+ V +V+ L+  RG++K PG S I ++ + + F++ D  +P+   ++A +  + +++K  GY P      +D+D E++E  +  HSEKLAVA+GLI T +   + +TKN+R+C+DCHS  K ISK + + I++RD NRFHH
Sbjct:  510 WRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVKEVMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNRFHH 698          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP386_ARATH (Pentatricopeptide repeat-containing protein At5g15340, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.410e-36
Identity = 77/200 (38.50%), Postives = 118/200 (59.00%), Query Frame = -1
Query:    5 DLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTK--VVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 598
            ++ + P   V GSLLGSC +H  VE+AER  + L ++ P N    +L++++Y A    D    ++  L  RG++K+PG S I V   ++ F S D  +P+ ++++  L  +   ++  GYVP     V   + D EEKE+ +  HSEKLAV FGL+ T     + + KNLR+C DCHS  K +SK  ++EI++RD NRFH
Sbjct:  411 EMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFH 610          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 7.410e-36
Identity = 69/200 (34.50%), Postives = 125/200 (62.50%), Query Frame = -1
Query:    2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601
            + + ++P   +WG+ L SC+IH ++ELAE A KRL  LEP N+ NY+++ ++Y+  + W++V+R++ L+    ++     S I++ + ++ F +  + +P    ++  L  L +EMK+ GYVP T  +  D+   EKE++++GH+EKLA+ +GLI       IR+ KN  +C D H+  K++S   N+EI++++  R HH
Sbjct:  557 QTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEGDIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLAMTYGLIKKKGLAPIRVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHH 756          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP446_ARATH (Pentatricopeptide repeat-containing protein At5g65570 OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.264e-35
Identity = 75/197 (38.07%), Postives = 123/197 (62.44%), Query Frame = -1
Query:    2 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEF-NPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 589
            I P   +W +LL +C++H  VE+AER ++++ E+EP + G  +L++++YA+   W+ V  +K  ++   L+K P  S +E+ ++ ++F++ D F +P  EQ+   L  L  + K+ GYV     V  D++   KER +  HSEKLA+AF  +  + G +IRI KNLR+C DCHS+ K +S+   +EI+ RD  RFHH
Sbjct:  531 INPDLVLWRTLLSACKVHRKVEMAERITRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHTFMAGDLFSHPNSEQILENLEELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFA-VWRNVGGSIRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHH 726          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP308_ARATH (Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.070e-34
Identity = 75/198 (37.88%), Postives = 118/198 (59.60%), Query Frame = -1
Query:    2 PGPKVWGSLLGSCRIHCNVELAERASKRL---FELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMK-EKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 583
            P    W +LL +C+     ++  R +  L   F+L+  +   Y+LL+++YA+A +W +V   +R L    ++K PG S +EV+++   F + +  +P  E +  LL  L  EM+   GYVP T  +L+D+D +EKE+++  HSE+ AVA+GL+    G  IRI KNLR+C DCH   K IS+   +EI+VRD  R+HH
Sbjct:  405 PDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLK--DPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHH 600          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP428_ARATH (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.113e-34
Identity = 74/199 (37.19%), Postives = 124/199 (62.31%), Query Frame = -1
Query:    5 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 601
            E + IEP   +W SLL S R + N EL E A + L + +   +G+YVLL+++Y++   W+  ++V+ L+   G++K  G+S +E    ++ F + D  + + + ++ +L  L  + K +G+V  T +VL D+  EEKE  +  HSEKLA+A+ ++ +S G  IRI KN+R+C DCH++ K +SK  N+ I++RD  RFH
Sbjct:  326 ESMPIEPDVVIWRSLLSSSRTYKNPELGEIAIQNLSKAK---SGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFH 521          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.018e-33
Identity = 71/194 (36.60%), Postives = 121/194 (62.37%), Query Frame = -1
Query:    2 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFE----QLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 571
            +W +LL +CR+  N+EL    +++L+ + P   GNYV++ ++Y +     E   V   LE++GL  +P  + +EV  + +SF+S D F+   E    Q++  +  L  E+ E GY  + + +L D+D +E+ER+   HSEKLA+A+GL+NT +   ++IT+N R+C++CH   +FIS    +E++VRD +RFHH
Sbjct:  496 MWAALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSMGKTAEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNETVKRQIYQKVDELMEEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRICKNCHKVVEFISLVTGREMVVRDASRFHH 689          
The following BLAST results are available for this feature:
BLAST of DC887856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
PP108_ARATH9.352e-3941.49Putative pentatricopeptide repeat-containing prote... [more]
PP182_ARATH1.221e-3843.23Pentatricopeptide repeat-containing protein At2g33... [more]
PP223_ARATH8.753e-3736.45Putative pentatricopeptide repeat-containing prote... [more]
PP406_ARATH3.326e-3637.04Pentatricopeptide repeat-containing protein At5g39... [more]
PP386_ARATH7.410e-3638.50Pentatricopeptide repeat-containing protein At5g15... [more]
PP297_ARATH7.410e-3634.50Pentatricopeptide repeat-containing protein At4g01... [more]
PP446_ARATH1.264e-3538.07Pentatricopeptide repeat-containing protein At5g65... [more]
PP308_ARATH1.070e-3437.88Pentatricopeptide repeat-containing protein At4g14... [more]
PP428_ARATH3.113e-3437.19Pentatricopeptide repeat-containing protein At5g50... [more]
PP427_ARATH2.018e-3336.60Pentatricopeptide repeat-containing protein At5g50... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887856 EIC Citrus sinensis cDNA clone EIC1003 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887856 ID=DC887856; Name=DC887856; organism=Citrus sinensis; type=EST; length=601bp
AATGGTGAAACCGGTTAACATCGCGAACCAGAATCTCTTTATTGGCAAAC
TTGGAAATGAATTTTGTAAAAGAATGGCAATCCTCACATAACCTCAAGTT
CTTTGTGATCCGAATTGTCTCCCCTTTGCTAGTGTTTATGAGTCCAAAAG
CAACTGCTAGTTTTTCGCTATGGCCTAATACAATACGTTCCTTTTCTTCT
GCATCAAGGTCGTAAAGCACAACTTTGGTTTGTGGCACATAGCCCTTCTC
CTTCATCTCGGCTGACAGATTGATTAACAGTGCATGCAGCTGTTCAAACT
GCGGGTTGAACTCATCAACGGACACAAATGAGTACATTTTCCTCTTAACT
TCAATCCTACTTCGACCTGGGACTTTCTGCAGACCCCTTGCTTCAAGAAG
CCTTTTCACTCTTTTTACCTCATCCCACATATCAGCTGCTGCATATACAT
CAGCTAGAAGTACATAATTCCCTGCATTTGTAGGCTCAAGCTCAAAAAGC
CTTTTGCTTGCTCTCTCAGCAAGCTCAACATTACAATGAATCCGACACGA
TCCAAGCAATGAACCCCAAACCTTAGGTCCCGGTTCAATTCTCAAATCTT
C
back to top