CN185422

Overview
NameCN185422
Unique NameCN185422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7970 contig Csv1_Contig7970:368..1004. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185422 vs. ExPASy Swiss-Prot
Match: PSKR2_ARATH (Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.748e-12
Identity = 41/99 (41.41%), Postives = 54/99 (54.55%), Query Frame = -3
Query:  275 LYKNNIQGTIPVELGNLKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIPPSGPFEPIPLNNFENN 571
            L  N + GTI  E+G LK L  LDL  NN +G IP S++ L +L  L L+ N L G IP +   ++ L    V+ N L G IP  G F   P ++FE N
Sbjct:  543 LNNNRLNGTILPEIGRLKELHMLDLSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPLSFQSLTFLSRFSVAYNRLTGAIPSGGQFYSFPHSSFEGN 641          

HSP 2 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 40/104 (38.46%), Postives = 55/104 (52.88%), Query Frame = -3
Query:  317 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIPPS 628
            LSG L   L  L  L+ L + +N     IP   GNL  L  LD+ +N  SG+ PPSL++   L  L L +N L+G I     G + L V+D++SN   G +P S
Sbjct:  244 LSGELSKNLSNLSGLKSLLISENRFSDVIPDVFGNLTQLEHLDVSSNKFSGRFPPSLSQCSKLRVLDLRNNSLSGSINLNFTGFTDLCVLDLASNHFSGPLPDS 347          
BLAST of CN185422 vs. ExPASy Swiss-Prot
Match: PGIP1_ARATH (Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana GN=PGIP1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.748e-12
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = -3
Query:  317 SNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGI-SSLKVVDVSSNDLCGTIPPS 634
            SNL+G + P + KL++L+ L L   N+ G IP  +  LK L  L+L  N++SG IP SL+ L  ++ L L+ N+LTG IP +      ++  + +S N L G IP S
Sbjct:  105 SNLTGTIQPTIAKLKNLRMLRLSWTNLTGPIPDFISQLKNLEFLELSFNDLSGSIPSSLSTLPKILALELSRNKLTGSIPESFGSFPGTVPDLRLSHNQLSGPIPKS 211          
BLAST of CN185422 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.895e-12
Identity = 46/112 (41.07%), Postives = 58/112 (51.79%), Query Frame = -3
Query:  260 LEHLQYLELYKNNIQGTIPVELGNLKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIPPSGPFEPIPLNNFENNPRLEG 595
            ++ L  L L  NN+ GTIP  +G   +L  LDL  N + G IP SL  L+ L  L L +N L G +P       SL  VDVS NDL G++P       + LN   NN  LEG
Sbjct:  289 MKSLSILVLRNNNLTGTIPSNIGEYSSLRQLDLSFNKLHGTIPASLFNLRQLTHLFLGNNTLNGSLPTQKG--QSLSNVDVSYNDLSGSLPSWVSLPNLNLNLVANNFTLEG 398          
BLAST of CN185422 vs. ExPASy Swiss-Prot
Match: RPKL_ARATH (Receptor protein kinase-like protein At4g34220 OS=Arabidopsis thaliana GN=At4g34220 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.349e-12
Identity = 40/121 (33.06%), Postives = 66/121 (54.55%), Query Frame = -3
Query:  275 NSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIPPSGPFEPIPLNNFENN 637
            N +L G + P+L  + +L+ L+L  N   G++P  + N   L S+ L +NN+SG +P S+  + +L  L L+ N  TG+IP  +  + +L VV +S N   G IP    FE   + +  +N
Sbjct:   88 NKHLLGSITPDLFSIPYLRILDLSSNFFNGSLPDSVFNATELQSISLGSNNLSGDLPKSVNSVTNLQLLNLSANAFTGEIPLNISLLKNLTVVSLSKNTFSGDIPSG--FEAAQILDLSSN 206          
BLAST of CN185422 vs. ExPASy Swiss-Prot
Match: Y2165_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = -3
Query:  323 LGKLEHLQYLELYKNNIQGTIPVELGNLKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIP 604
            LG L  L+ L L +N++   +P  LG L  L  LDL  N+ +G +P S + LK+L+ L ++ N LTG IPP L  +S L  ++ SSN     IP
Sbjct:  148 LGNLTSLRTLNLSQNSLTSLVPSSLGQLLNLSQLDLSRNSFTGVLPQSFSSLKNLLTLDVSSNYLTGPIPPGLGALSKLIHLNFSSNSFSSPIP 241          

HSP 2 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 39/105 (37.14%), Postives = 61/105 (58.10%), Query Frame = -3
Query:  275 LQYLELYKNNIQGTIPVELGNLKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIPPS-GPFEPIPLNNFENN 586
            L+ L+L   ++ G +P  LGNL +L +L+L  N+++  +P SL +L +L  L L+ N  TG +P +   + +L  +DVSSN L G IPP  G    +   NF +N
Sbjct:  130 LEVLDLSSCSVNGVVPFTLGNLTSLRTLNLSQNSLTSLVPSSLGQLLNLSQLDLSRNSFTGVLPQSFSSLKNLLTLDVSSNYLTGPIPPGLGALSKLIHLNFSSN 234          

HSP 3 Score: 68.1662 bits (165), Expect = 4.144e-11
Identity = 47/142 (33.10%), Postives = 68/142 (47.89%), Query Frame = -3
Query:  224 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGI-SSLKVVDVSSNDLCGTIP------PSGPFEPIPLNNFENNPRLEGPELLGLASYDTN 628
            L+G + P LG L  L +L    N+    IP ELG+L  L+  DL  N++SG +P  L KL  L  + + DN L+G +P  L    S L+ + +  N   G++P      P      I  NNF          LL  +SYD++
Sbjct:  212 LTGPIPPGLGALSKLIHLNFSSNSFSSPIPSELGDLVNLVDFDLSINSLSGSVPQELRKLSKLQLMAIGDNLLSGTLPVDLFSAESQLQTLVLRENGFSGSLPDVCWSLPKLRILDIAKNNFTG--------LLPYSSYDSD 345          
BLAST of CN185422 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11
Identity = 37/104 (35.58%), Postives = 62/104 (59.62%), Query Frame = -3
Query:  323 SNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIP 634
            + L+G +  E G +  L  L L  N + G +P+ELGNL  +  + L +NN +G+IP + AKL +L   R++DN+L+G IP  +   + L+ + + ++ L G IP
Sbjct:  120 NRLTGPIPKEFGNITTLTSLVLEANQLSGELPLELGNLPNIQQMILSSNNFNGEIPSTFAKLTTLRDFRVSDNQLSGTIPDFIQKWTKLERLFIQASGLVGPIP 223          

HSP 2 Score: 68.5514 bits (166), Expect = 3.173e-11
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = -3
Query:  323 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIP 628
            L+G + PE G L  L  + L  N + G IP E GN+ TL SL L  N +SG++P  L  L ++  + L+ N   G+IP     +++L+   VS N L GTIP
Sbjct:   99 LNGSIPPEWGVLP-LVNIWLLGNRLTGPIPKEFGNITTLTSLVLEANQLSGELPLELGNLPNIQQMILSSNNFNGEIPSTFAKLTTLRDFRVSDNQLSGTIP 199          
BLAST of CN185422 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = -3
Query:  323 SNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIP 634
            + LSG +  E G    L YL+L  N   GTIP ELGNL  L  L L +N ++G +P SLA+L+++   R+ D +L+G IP  +     L+ +++ ++ L G IP
Sbjct:  156 NRLSGEIPKEFGN-SSLTYLDLESNAFSGTIPQELGNLVHLKKLLLSSNKLTGTLPASLARLQNMTDFRINDLQLSGTIPSYIQNWKQLERLEMIASGLTGPIP 258          
BLAST of CN185422 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.424e-11
Identity = 39/103 (37.86%), Postives = 61/103 (59.22%), Query Frame = -3
Query:  323 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGN-LKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIP 628
            L+G +   L     LQ L+L  N++ G+IP ++ + L  L++LDL  N + G IP  + + K L  L L+DN+L+G IP  L  +  L+ + ++ NDL GTIP
Sbjct:   84 LAGEIPESLKLCRSLQSLDLSGNDLSGSIPSQICSWLPYLVTLDLSGNKLGGSIPTQIVECKFLNALILSDNKLSGSIPSQLSRLDRLRRLSLAGNDLSGTIP 186          
BLAST of CN185422 vs. ExPASy Swiss-Prot
Match: Y1699_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g69990 OS=Arabidopsis thaliana GN=At1g69990 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = -3
Query:  323 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGN-LKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIP 628
            LSG++   L     LQ L+L  N+  G IP ++ + L  L++LDL  N +SG IP  +   K L  L L  N+LTG IP  L  ++ L+ + ++ NDL G+IP
Sbjct:   77 LSGQIPESLKLCRSLQSLDLSFNDFSGLIPSQICSWLPYLVTLDLSGNKLSGSIPSQIVDCKFLNSLALNQNKLTGSIPSELTRLNRLQRLSLADNDLSGSIP 179          
BLAST of CN185422 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = -3
Query:  317 NSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIPPS 637
            ++NL G L   L     L+ ++   N+I G+IP  L    +L +L L  NN +G IP SL+ LKSL  + L +N L+G+IP     +  +  +D+SSN+L G +PPS
Sbjct:   85 SANLGGELGVGLNMFTSLKAMDFSNNHIGGSIPSTLP--VSLQNLFLSGNNFTGTIPESLSSLKSLSVMSLNNNLLSGKIPDVFQDLGLMINIDLSSNNLSGPLPPS 189          
The following BLAST results are available for this feature:
BLAST of CN185422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
PSKR2_ARATH3.748e-1241.41Phytosulfokine receptor 2 OS=Arabidopsis thaliana ... [more]
PGIP1_ARATH3.748e-1239.25Polygalacturonase inhibitor 1 OS=Arabidopsis thali... [more]
Y5614_ARATH4.895e-1241.07Probable LRR receptor-like serine/threonine-protei... [more]
RPKL_ARATH8.349e-1233.06Receptor protein kinase-like protein At4g34220 OS=... [more]
Y2165_ARATH1.090e-1140.43Probable LRR receptor-like serine/threonine-protei... [more]
Y1534_ARATH1.090e-1135.58Probable LRR receptor-like serine/threonine-protei... [more]
RKF1_ARATH1.090e-1138.46Probable LRR receptor-like serine/threonine-protei... [more]
Y1719_ARATH1.424e-1137.86Probable inactive receptor kinase At1g27190 OS=Ara... [more]
Y1699_ARATH2.429e-1138.83Probable LRR receptor-like serine/threonine-protei... [more]
SRF1_ARATH2.429e-1138.32Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001F01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185422 ID=CN185422; Name=CN185422; organism=Citrus sinensis; type=EST; length=639bp
TTTTTTTTTTTTTTTTTCTTTTTTGAAAGTTGAAACATTTTTATGAAAAT
CACAACGACCCTATTACAGATGCATTTAAGCAGTATAATACAATTTACAT
ATATGATGGCTTCATTTCACCAATAACACTACGCTTTTTAGGTAAAGACG
CTTTCGATCTTCGCGGACACGGGGGTGGGAAACCTGAGTAGAGCTTGAAG
CAACAATCAATCGTTTATGAGCAGTTTGTGTCATAACTTGCAAGTCCCAG
CAACTCTGGACCTTCTAATCGAGGGTTATTCTCAAAGTTGTTGAGGGGGA
TGGGTTCAAATGGTCCGCTTGGAGGAATTGTTCCACACAGATCATTGCTT
GAAACATCCACAACTTTGAGACTTGAAATTCCAACAAGGGCCGGGGGAAT
TTGTCCAGTTAGCCGATTATCGGTAAGCCGCAAAAAAACAAGAGATTTCA
ATTTAGCCAAGGAAGGAGGGATTTTCCCCGAGATGTTGTTATTATACAAG
TCCAAGCTGATGAGGGTCTTCAAGTTACCGAGCTCGACAGGGATAGTTCC
TTGGATGTTGTTTTTGTAAAGTTCCAGGTATTGCAAATGCTCGAGCTTGC
CCAGTTCAGGGACGAGACGGCCGGATAAATTTGAATTAC
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