CN185422

Overview
NameCN185422
Unique NameCN185422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7970 contig Csv1_Contig7970:368..1004. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185422 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 45/118 (38.14%), Postives = 60/118 (50.85%), Query Frame = -3
Query:  275 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIPPSGPFEPIPLNNFENN 628
            L+G L P+   L  L+YL L  N   G IP  L  L  +I ++L  NN  G+IP ++     L  L L DN+LTG IP   +    L+  +VSSN L G+IP   P   +P   F  N
Sbjct:   99 LNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNVNSATRLATLYLQDNQLTGPIPEIKI---KLQQFNVSSNQLNGSIP--DPLSGMPKTAFLGN 211          
BLAST of CN185422 vs. ExPASy Swiss-Prot
Match: Y5020_ARATH (Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 41/116 (35.34%), Postives = 64/116 (55.17%), Query Frame = -3
Query:  257 LGKLEHLQYLELYKNNIQGTIPVELGNLKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIPPSGPFEPIPLNNFENNPRLEGP 604
            L     ++ L+L  N++ G +P ++G ++ +  L+L NN +SG++P  L KL  L+FL L++N   GQIP  L   S +   +VS NDL G IP      P P + +  N +L  P
Sbjct:  464 LNSYPQMELLDLSTNSLTGMLPGDIGTMEKIKVLNLANNKLSGELPSDLNKLSGLLFLDLSNNTFKGQIPNKLP--SQMVGFNVSYNDLSGIIPEDLRSYP-PSSFYPGNSKLSLP 576          
BLAST of CN185422 vs. ExPASy Swiss-Prot
Match: BRL1_ARATH (Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 38/130 (29.23%), Postives = 67/130 (51.54%), Query Frame = -3
Query:  323 NSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKTLISLDLYNNNI-------------------------SGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIP 637
            N+ LSG +  ELGK + L+ ++L  N + G IP E+  L  L  L ++ NN+                         +G IP S+++  +++++ L+ NRLTG+IP  +  +S L ++ + +N L G +P
Sbjct:  411 NNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVP 540          
BLAST of CN185422 vs. ExPASy Swiss-Prot
Match: Y5815_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150 OS=Arabidopsis thaliana GN=At5g58150 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = -3
Query:  323 LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIP 616
            L  +L  L  L+ L L  N I   +P  +GN  +L +LDL  N+ISGKIP +++ L +L  L+L +N     +PP LV   SL  +D+SSN L  ++P
Sbjct:  105 LPSDLWSLSLLESLNLSSNRISEPLPSNIGNFMSLHTLDLSFNSISGKIPAAISNLVNLTTLKLHNNDFQFGVPPELVHCRSLLSIDLSSNRLNESLP 202          
BLAST of CN185422 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 52/170 (30.59%), Postives = 81/170 (47.65%), Query Frame = -3
Query:  143 SNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIP------PSGPFEPIPLNNFENNPRLEGPELLGLASYDTNCS*TIDCCFKLYSGFPPPCPRRSKASL 634
            +  +G +   LG L  L  + L  N + G +P    NL  LI+LD+ +NNISG +PPS+  L +L  LR+ +N+L+G +   L G+  L+ +++ +N   G IP      P    E  P N    N     P L        + S T     + +SG PPP   R++  +
Sbjct:  130 NQFTGSIPESLGTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQNNQLSGTL-DVLQGL-PLQDLNIENNLFSGPIPDKLLSIPKFLHEGNPFNATMINSTSTAPSL------SPSLSPTKPAPTRPFSGVPPPPNERNRGKV 291          
BLAST of CN185422 vs. ExPASy Swiss-Prot
Match: PGIP1_ORYSJ (Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica GN=FOR1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = -3
Query:  260 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKTLISLDLYNNNISGKIPPSLAKLKSLVFLRLTDNRLTGQIPPALVGISSLKVVDVSSNDLCGTIPPSGPFEPIPLNNFENNPRLEG 628
            LSG +   L  L +LQ+L +   N+ G IP  L  +++L S+DL +N+++G IP S + L +L  L L  N+LTG IP  LV     + + +S N L G IP     + I   +  +N RL G
Sbjct:  108 LSGPIPACLTALSNLQFLTISHTNVSGVIPDSLARIRSLDSVDLSHNSLTGPIPNSFSDLPNLRSLDLRSNKLTGCIPAGLVQ-GQFRSLILSYNQLTGPIPRDDAQDEINTVDLSHN-RLTG 228          
The following BLAST results are available for this feature:
BLAST of CN185422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
Y5659_ARATH7.068e-1138.14Probable inactive receptor kinase At5g16590 OS=Ara... [more]
Y5020_ARATH7.068e-1135.34Probable inactive receptor kinase At5g10020 OS=Ara... [more]
BRL1_ARATH7.068e-1129.23Serine/threonine-protein kinase BRI1-like 1 OS=Ara... [more]
Y5815_ARATH9.231e-1139.80Probably inactive leucine-rich repeat receptor-lik... [more]
SRF3_ARATH9.231e-1130.59Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
PGIP1_ORYSJ9.231e-1136.59Polygalacturonase inhibitor 1 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001F01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185422 ID=CN185422; Name=CN185422; organism=Citrus sinensis; type=EST; length=639bp
TTTTTTTTTTTTTTTTTCTTTTTTGAAAGTTGAAACATTTTTATGAAAAT
CACAACGACCCTATTACAGATGCATTTAAGCAGTATAATACAATTTACAT
ATATGATGGCTTCATTTCACCAATAACACTACGCTTTTTAGGTAAAGACG
CTTTCGATCTTCGCGGACACGGGGGTGGGAAACCTGAGTAGAGCTTGAAG
CAACAATCAATCGTTTATGAGCAGTTTGTGTCATAACTTGCAAGTCCCAG
CAACTCTGGACCTTCTAATCGAGGGTTATTCTCAAAGTTGTTGAGGGGGA
TGGGTTCAAATGGTCCGCTTGGAGGAATTGTTCCACACAGATCATTGCTT
GAAACATCCACAACTTTGAGACTTGAAATTCCAACAAGGGCCGGGGGAAT
TTGTCCAGTTAGCCGATTATCGGTAAGCCGCAAAAAAACAAGAGATTTCA
ATTTAGCCAAGGAAGGAGGGATTTTCCCCGAGATGTTGTTATTATACAAG
TCCAAGCTGATGAGGGTCTTCAAGTTACCGAGCTCGACAGGGATAGTTCC
TTGGATGTTGTTTTTGTAAAGTTCCAGGTATTGCAAATGCTCGAGCTTGC
CCAGTTCAGGGACGAGACGGCCGGATAAATTTGAATTAC
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