CN185410

Overview
NameCN185410
Unique NameCN185410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185410_ssr822 microsatellite CN185410_ssr822:822..835. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1957 contig Csv1_Contig1957:15..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185410 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.315e-26
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = -3
Query:  351 DPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 653
            DPFA+A   +        VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CNGTV++ PE G+V+QLQGDQR+N+  +L + G+ K + +K+HGF
Sbjct:   10 DPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110          
BLAST of CN185410 vs. ExPASy Swiss-Prot
Match: SUI1_SCHPO (Protein translation factor sui1 OS=Schizosaccharomyces pombe GN=sui1 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 9.645e-26
Identity = 59/101 (58.42%), Postives = 76/101 (75.25%), Query Frame = -3
Query:  351 DPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 653
            DPFA+   +D  A   + +HIR+QQRNGRK+LTTVQGL +EF   +IL+ LKK+F CNGT+V+D +LG+VIQLQGDQR  V  FL Q   ++K+ IKIHGF
Sbjct:   11 DPFADTGDDD--AQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109          
BLAST of CN185410 vs. ExPASy Swiss-Prot
Match: EIF1_CHICK (Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus gallus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.304e-22
Identity = 46/79 (58.23%), Postives = 63/79 (79.75%), Query Frame = -3
Query:  351 VQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 587
            +QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:    1 IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 79          
The following BLAST results are available for this feature:
BLAST of CN185410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_DROME3.315e-2653.47Protein translation factor SUI1 homolog OS=Drosoph... [more]
SUI1_SCHPO9.645e-2658.42Protein translation factor sui1 OS=Schizosaccharom... [more]
EIF1_CHICK1.304e-2258.23Eukaryotic translation initiation factor 1 (Fragme... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001E19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185410 ID=CN185410; Name=CN185410; organism=Citrus sinensis; type=EST; length=841bp
TTTTTTTTTTTTTTTTTAGTAATTTTTTCACCTGCTCAAATAGAAATTCA
CTTCACCAGCAACTTAAAGGAGGGCGGAAACAAACAACTATTCATATGAA
TTGAAAGCAGGAATACATTTTATTTTGCTTAAAATAAGTCTTGGAAGAAA
CCATAATATTCCCAAACAAAAGAACACTACTACAAACTAAAAAGTTTAAA
CGCACAAGCAAGCTTGCATCAAACTTTTTGTTTGGACAGCGTTACATAAC
ACAACAGTCAATAATAAATTAATATATAGATCATATACTTCTTGCTACCA
ATAGTTGGAGATGGATAAACAACATATAGCAACTTGGCTCCCACTATTTA
GAAACCATGAATCTTGATGAATTCCTTCTTCACAATACCAGCCTGAACGA
GGAAGGTGGACACATTCTTCCTCTGGTCACCCTGAAGCTGTATGACCTGG
CCTAACTCAGGGTCCTGTACAACAGTACCATTACAGCAGAACTCTTTCTT
GAGGTCCTTGAGAATCTTGTTGTAGCTGAATTCTTTCTTCAACCCTTGCA
CAGTTGTCAGGCTTTTCCTCCCATTACGTTGCTGCACGCGAATATGCACA
TAATCTTTTGAACCAGCACCTGAGTCCTCAGCATTTGCCTCAGCAAAGGG
ATCAAAGGCAGATGGAATCTGGGTGTCAAATTCAGACATGAAACTTGGTT
GTTGGAGTGTCAAAGAGTCCGTAACCAGCAAGAAATTGGCTTCAATTCAC
TTAAATTGCTCTTAGCTTAAGAGGAAGATTGCGAATCAAACTGCCTTACG
AGAGCGGAAACAAGAGAAGCCAGAGAGAGAGAGAGAAAAAA
back to top