CN185404

Overview
NameCN185404
Unique NameCN185404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:608..1387. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185404 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.943e-39
Identity = 92/189 (48.68%), Postives = 114/189 (60.32%), Query Frame = -2
Query:  283 DEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG------RVGGVVTNWALVSMNHDTQSCMDPNVMEAK---------------VVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 780
            +++  YVV+KHAALF ST++SK+L  PNVKLFNA   EDL+ +         V GVVTNW LV+  H TQ CMDPNV+E                 V++S+ GHDGPFGA   KR+  I   +++ GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA   LK
Sbjct:  134 EDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322          
BLAST of CN185404 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.000e-26
Identity = 68/157 (43.31%), Postives = 90/157 (57.32%), Query Frame = -2
Query:  274 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 744
            A+  +T ++    +  VK+FN V  EDL+VK  RV G+V NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+IE++PG  A+     E   V  T+EV PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:  102 AIEVATTIASKTVKAGVKIFNMVEVEDLVVKDDRVSGIVINWTPVKM---TGLHVDPLTVEAKYVIDSTGH----GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of CN185404 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 8.528e-26
Identity = 66/156 (42.31%), Postives = 89/156 (57.05%), Query Frame = -2
Query:  277 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 744
            A+  +T ++  + +  VK+FN +  EDL++K  RV G+V NW  V M       +DP  +EAK V+ S GH        VKR    G+++E+PG  A+     E   V+ TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:  102 AIEVATTIASKVVKSGVKIFNMIEVEDLVIKDNRVSGIVINWTPVLM---AGLHVDPLTIEAKYVIDSTGHGAQVAQFLVKR----GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of CN185404 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.900e-25
Identity = 68/156 (43.59%), Postives = 88/156 (56.41%), Query Frame = -2
Query:  277 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 744
            A+  +T ++    +  VK+FN +  EDL+VK  RV G+V NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+IE +PG  A+     E   V  TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  102 AIEVATTIASKTVKAGVKIFNMIEVEDLVVKDNRVSGIVINWTPVLM---TGLHVDPLTVEAKYVIDSTGH----GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of CN185404 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.232e-25
Identity = 69/154 (44.81%), Postives = 90/154 (58.44%), Query Frame = -2
Query:  271 STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 732
            ST+ SK + +   K+FN V  EDL+VK GRV G+V NW  V M   T   +DP  +EAK VV S GH    GA   + L   G+I+ +PG   +     E+  V  TREV PG+  TGM    + GAPRMGP FG M++SG+KAA   L+ LG+
Sbjct:  106 STLASKAV-KAGAKIFNMVEVEDLVVKDGRVSGLVINWTPVMM---TGLHVDPLTVEAKFVVDSTGH----GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251          
BLAST of CN185404 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.966e-22
Identity = 62/154 (40.26%), Postives = 91/154 (59.09%), Query Frame = -2
Query:  274 IMSKLLARP---NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 726
            + +KL AR      ++ N    +D+IV+  RV GVV NW+ V       +C+DP  + A+ VV + GHD    A   ++L   GM+E    +  + +  +ED +V  T EV PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:  109 LAAKLAARALEAGAEVLNLTMLDDVIVENSRVAGVVVNWSPVQGLPRQITCVDPVGLRAEYVVDATGHD----AVVTRKLAERGMVE-ASKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of CN185404 vs. ExPASy Swiss-Prot
Match: THI4_METTP (Putative thiazole biosynthetic enzyme OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1121 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18
Identity = 56/147 (38.10%), Postives = 79/147 (53.74%), Query Frame = -2
Query:  271 KLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSI-----GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 693
            +L N V+ ED++++ G R+ G+V NW    M       +DP  + A+VV+   GHD        K++        G+I E P   AL     E  +V  TREV PG+IV GM    +   PRMGP FG M++SG+KAA +AL+ L Q
Sbjct:  120 ELINLVSVEDVMIREGDRIVGLVINWTAADM---AGIHVDPLAIRARVVIDGTGHDAAVCRVVQKKIPGAIVGESGVIGEKPMWAAL----GEKIVVDATREVYPGLIVAGMAATTVAAGPRMGPIFGGMLLSGEKAASIALEKLAQ 259          
BLAST of CN185404 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.837e-18
Identity = 54/148 (36.49%), Postives = 79/148 (53.38%), Query Frame = -2
Query:  271 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 645
            RVGG+V NW  V       +C+DP  +E+ +VV S GHD          G   A G++     + GM             + PG  ++ ++ +ED +V  T  V PG++ TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:  145 RVGGIVLNWTPVHALPRELTCVDPVAVESDLVVDSTGHDAVVISKLSERGVLNAPGIEHANEHNTGMDNTADDEYGAPGHDSPGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
BLAST of CN185404 vs. ExPASy Swiss-Prot
Match: THI4_NATPD (Putative thiazole biosynthetic enzyme OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=NP5174A PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.116e-17
Identity = 58/164 (35.37%), Postives = 85/164 (51.83%), Query Frame = -2
Query:  274 KLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 693
            K+ N     D++++   RVGG+V NW  V       +C+DP  +EA +V+ + GHD          G   A G++     + GM +           + PG  ++ +  +EDA+V  T     G+IVTGM  A   G PRMGPTFGAM++SG++AA  AL  LG
Sbjct:  129 KMQNMTEFTDIVIREDHRVGGIVMNWTPVHALPREITCVDPIAVEADLVIDATGHDAVAVSKLQERGVLNAPGIEHADEHNTGMDQTGDDSYGAPGHDSPGHDSMWVGQSEDAVVEHTGLAHEGLIVTGMATATTYGLPRMGPTFGAMLLSGKRAAQAALDELG 292          
BLAST of CN185404 vs. ExPASy Swiss-Prot
Match: THI4_HALMA (Putative thiazole biosynthetic enzyme OS=Haloarcula marismortui GN=rrnAC1782 PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.116e-17
Identity = 56/164 (34.15%), Postives = 84/164 (51.22%), Query Frame = -2
Query:  277 KLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE------------------------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 693
            K+ N     D++++   RVGG+V NW  V       +C+DP  +EA +V+ + GHD    A  VK+L   G++                         + PG  ++ +  +EDA+V  T     G++VTGM  A   G PRMGPTFGAM++SG++AA +AL  L
Sbjct:  132 KMQNMTEFTDIVIREDHRVGGIVMNWTPVHALPREITCVDPIAVEADLVIDATGHD----AMAVKKLDERGVLNAPGLEDEASGMDQTDDDTYGAPGHDSPGHDSMWVGESEDAVVEHTGLAHDGLVVTGMATATTYGLPRMGPTFGAMLVSGKRAAQVALDEL 291          
The following BLAST results are available for this feature:
BLAST of CN185404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
THI4_YEAST3.943e-3948.68Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRFU5.000e-2643.31Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRHO8.528e-2642.31Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB1.900e-2543.59Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRKO4.232e-2544.81Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_AERPE1.966e-2240.26Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_METTP2.938e-1838.10Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_HALWD3.837e-1836.49Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_NATPD1.116e-1735.37Putative thiazole biosynthetic enzyme OS=Natronomo... [more]
THI4_HALMA1.116e-1734.15Putative thiazole biosynthetic enzyme OS=Haloarcul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001E15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185404 ID=CN185404; Name=CN185404; organism=Citrus sinensis; type=EST; length=781bp
GGGGGGGCAAGCGGTCCCCCTTTTTTTGGACCGGAACAACACTTTATTCA
CAAAACCTCACAACATCATCTCACTATTCGCATCAACCATCCATCACAAC
CACCTAAATACAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGC
TGATGAGTGATGATGCCTGTTATTATCAAATTAACCATCAGCAGTCTCAG
CAGAATCAGCTGCAGCTAAGATCAGCTCAGGGTGAACACCTCCCACATAT
GTACCGTCTAATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGC
AGCCTTCTGCCCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCTAG
GAGCACCATCAATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGC
ACAACCTCCCTGGTCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTC
CAGTGCCTTCATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAACC
TCTTTACTCCAGTGGCCCCAAAAGGCCCATCATGGCCACAAGAGCTCACA
ACCACCTTCGCTTCCATTACATTGGGATCCATGCAAGACTGTGTATCGTG
ATTCATTGACACCAACGCCCAGTTGGTCACCACACCACCAACTCTGCCGC
CTTTGACTATCAAGTCCTCGGCTGCCACTGCATTAAAGAGCTTGACGTTG
GGGCGGGCCAGGAGCTTGCTCATTATAGTGGAGGTGAACAGCGCTGCATG
CTTGATCACAACATAGCTGTCTTGCTCATCG
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