CN185404

Overview
NameCN185404
Unique NameCN185404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:608..1387. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185404 vs. ExPASy Swiss-Prot
Match: THI4_HALSA (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarium GN=VNG_2604G PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.488e-14
Identity = 50/163 (30.67%), Postives = 81/163 (49.69%), Query Frame = -2
Query:  277 KLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 693
            ++ N     D++V+    V G V NW  V       +C+DP  +EA VVV + GHD          G   A G++ ++  + GM +           + PG  ++ +  +ED +V  T +V  G++  G+  A + G  RMGPTFGAM++SG+ AA+  +  L
Sbjct:  128 RIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATGHDAVVVSKLHERGVLEADGIEHVEEHATGMDQSGDGEYGAPGHDSPGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPTFGAMLLSGKVAANAVMDEL 290          
BLAST of CN185404 vs. ExPASy Swiss-Prot
Match: THI4_HALS3 (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE4651F PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.488e-14
Identity = 50/163 (30.67%), Postives = 81/163 (49.69%), Query Frame = -2
Query:  277 KLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 693
            ++ N     D++V+    V G V NW  V       +C+DP  +EA VVV + GHD          G   A G++ ++  + GM +           + PG  ++ +  +ED +V  T +V  G++  G+  A + G  RMGPTFGAM++SG+ AA+  +  L
Sbjct:  128 RIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATGHDAVVVSKLHERGVLEADGIEHVEEHATGMDQSGDGEYGAPGHDSPGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPTFGAMLLSGKVAANAVMDEL 290          
BLAST of CN185404 vs. ExPASy Swiss-Prot
Match: THI4_ARCFU (Putative thiazole biosynthetic enzyme OS=Archaeoglobus fulgidus GN=AF_0702 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.339e-13
Identity = 48/158 (30.38%), Postives = 81/158 (51.27%), Query Frame = -2
Query:  277 TSTIMSKLLARP---NVKLFNAVAAEDLIVKGGRVG--GVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 735
            ++  M+KL A+      K+ + V+ ED+I +   +G  GV   W+ V ++      +DP  + ++ VV + GHD    +   ++   I +   V G ++     AE  IV  T ++V G+   GM VA +   PRMGP FG M++SG+K A +  + L
Sbjct:  107 SAEFMAKLAAKAIDAGAKIIHGVSVEDVIFRDDPLGVRGVCIQWSAVEISG---LHVDPLFLRSRAVVDATGHDAEVISVAARK---IPLEVSVVGERSAYSEVAEREIVEKTGKIVKGLYAAGMAVAAVHNLPRMGPIFGGMLLSGKKVAEIVAEDL 258          
BLAST of CN185404 vs. ExPASy Swiss-Prot
Match: THI4_METJA (Putative thiazole biosynthetic enzyme OS=Methanocaldococcus jannaschii GN=MJ0601 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.279e-13
Identity = 48/139 (34.53%), Postives = 70/139 (50.36%), Query Frame = -2
Query:  277 KLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 693
            K+   +  EDLI++   V GVV N   +         +DP  + +KVVV + GH+       VK+ K   +  +VPG K++     E+A++R TREV P + V GM      G  RMG  FG M +SG+  A L  + L
Sbjct:  127 KILTGIVVEDLILREDGVAGVVINSYAIER---AGLHIDPLTIRSKVVVDATGHEASIVNILVKKNK---LEADVPGEKSMWAEKGENALLRNTREVYPNLFVCGMAANASHGGYRMGAIFGGMYLSGKLCAELITEKL 259          
The following BLAST results are available for this feature:
BLAST of CN185404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
THI4_HALSA7.488e-1430.67Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALS37.488e-1430.67Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_ARCFU6.339e-1330.38Putative thiazole biosynthetic enzyme OS=Archaeogl... [more]
THI4_METJA8.279e-1334.53Putative thiazole biosynthetic enzyme OS=Methanoca... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001E15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185404 ID=CN185404; Name=CN185404; organism=Citrus sinensis; type=EST; length=781bp
GGGGGGGCAAGCGGTCCCCCTTTTTTTGGACCGGAACAACACTTTATTCA
CAAAACCTCACAACATCATCTCACTATTCGCATCAACCATCCATCACAAC
CACCTAAATACAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGC
TGATGAGTGATGATGCCTGTTATTATCAAATTAACCATCAGCAGTCTCAG
CAGAATCAGCTGCAGCTAAGATCAGCTCAGGGTGAACACCTCCCACATAT
GTACCGTCTAATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGC
AGCCTTCTGCCCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCTAG
GAGCACCATCAATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGC
ACAACCTCCCTGGTCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTC
CAGTGCCTTCATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAACC
TCTTTACTCCAGTGGCCCCAAAAGGCCCATCATGGCCACAAGAGCTCACA
ACCACCTTCGCTTCCATTACATTGGGATCCATGCAAGACTGTGTATCGTG
ATTCATTGACACCAACGCCCAGTTGGTCACCACACCACCAACTCTGCCGC
CTTTGACTATCAAGTCCTCGGCTGCCACTGCATTAAAGAGCTTGACGTTG
GGGCGGGCCAGGAGCTTGCTCATTATAGTGGAGGTGAACAGCGCTGCATG
CTTGATCACAACATAGCTGTCTTGCTCATCG
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